RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 B2RBV5 119 aa13.08□□□□□ -0.32
TRIM28-203ENST00000593582 LYNX1G3V0Z9 82 aa13.08□□□□□ -0.32
TRIM28-203ENST00000593582 OR10H3O60404 316 aa13.08□□□□□ -0.32
TRIM28-203ENST00000593582 FAM107AO95990 144 aa13.08□□□□□ -0.32
TRIM28-203ENST00000593582 MT-ND5P03915 603 aa13.08□□□□□ -0.32
TRIM28-203ENST00000593582 LYNX1P0DP58 116 aa13.08□□□□□ -0.32
TRIM28-203ENST00000593582 CTLA4P16410 223 aa13.08□□□□□ -0.32
TRIM28-203ENST00000593582 ZNF16P17020 682 aaPredicted RBP13.08□□□□□ -0.32
TRIM28-203ENST00000593582 RPS6KA3P51812 740 aa13.08□□□□□ -0.32
TRIM28-203ENST00000593582 CHN2P52757 468 aa13.08□□□□□ -0.32
TRIM28-203ENST00000593582 RIN1Q13671 783 aa13.08□□□□□ -0.32
TRIM28-203ENST00000593582 ENDOGQ14249 297 aaKnown RBP13.08□□□□□ -0.32
TRIM28-203ENST00000593582 ALKBH6Q3KRA9 238 aa13.08□□□□□ -0.32
TRIM28-203ENST00000593582 CHRFAM7AQ494W8 412 aa13.08□□□□□ -0.32
TRIM28-203ENST00000593582 ZNF774Q6NX45 483 aa13.08□□□□□ -0.32
TRIM28-203ENST00000593582 TMEM154Q6P9G4 183 aa13.08□□□□□ -0.32
TRIM28-203ENST00000593582 SMARCD3Q6STE5 483 aa13.08□□□□□ -0.32
TRIM28-203ENST00000593582 ARL9Q6T311 187 aa13.08□□□□□ -0.32
TRIM28-203ENST00000593582 ZER1Q7Z7L7 766 aa13.08□□□□□ -0.32
TRIM28-203ENST00000593582 GLB1L2Q8IW92 636 aa13.08□□□□□ -0.32
TRIM28-203ENST00000593582 C1orf174Q8IYL3 243 aa13.08□□□□□ -0.32
TRIM28-203ENST00000593582 CCDC197Q8NCU1 140 aa13.08□□□□□ -0.32
TRIM28-203ENST00000593582 NSL1Q96IY1 281 aa13.08□□□□□ -0.32
TRIM28-203ENST00000593582 GPA33Q99795 319 aa13.08□□□□□ -0.32
TRIM28-203ENST00000593582 SYT4Q9H2B2 425 aa13.08□□□□□ -0.32
TRIM28-203ENST00000593582 RERGLQ9H628 205 aa13.08□□□□□ -0.32
TRIM28-203ENST00000593582 EMC7Q9NPA0 242 aa13.08□□□□□ -0.32
TRIM28-203ENST00000593582 HINT3Q9NQE9 182 aaKnown RBP13.08□□□□□ -0.32
TRIM28-203ENST00000593582 VSX1Q9NZR4 365 aaPredicted RBP13.08□□□□□ -0.32
TRIM28-203ENST00000593582 CDC42EP3Q9UKI2 254 aa13.08□□□□□ -0.32
TRIM28-203ENST00000593582 IER3IP1Q9Y5U9 82 aa13.08□□□□□ -0.32
TRIM28-203ENST00000593582 RTTNQ86VV8 2226 aa13.07□□□□□ -0.32
TRIM28-203ENST00000593582 LOC100289279A0A1B0GTE1 492 aa13.07□□□□□ -0.32
TRIM28-203ENST00000593582 SOCS2O14508 198 aa13.07□□□□□ -0.32
TRIM28-203ENST00000593582 SLC16A7O60669 478 aa13.07□□□□□ -0.32
TRIM28-203ENST00000593582 KHDRBS3O75525 346 aaKnown RBP13.07□□□□□ -0.32
TRIM28-203ENST00000593582 HPXP02790 462 aa13.07□□□□□ -0.32
TRIM28-203ENST00000593582 GCH1P30793 250 aa13.07□□□□□ -0.32
TRIM28-203ENST00000593582 RRM2P31350 389 aa13.07□□□□□ -0.32
TRIM28-203ENST00000593582 WNT5AP41221 380 aa13.07□□□□□ -0.32
TRIM28-203ENST00000593582 FXYD6P3P58550 94 aa13.07□□□□□ -0.32
TRIM28-203ENST00000593582 SCRN3Q0VDG4 424 aa13.07□□□□□ -0.32
TRIM28-203ENST00000593582 PCGF3Q3KNV8 242 aa13.07□□□□□ -0.32
TRIM28-203ENST00000593582 ZNF718Q3SXZ3 478 aa13.07□□□□□ -0.32
TRIM28-203ENST00000593582 ELFN2Q5R3F8 820 aa13.07□□□□□ -0.32
TRIM28-203ENST00000593582 FAM166AQ6J272 317 aa13.07□□□□□ -0.32
TRIM28-203ENST00000593582 UGT2A3Q6UWM9 527 aa13.07□□□□□ -0.32
TRIM28-203ENST00000593582 CYP2R1Q6VVX0 501 aa13.07□□□□□ -0.32
TRIM28-203ENST00000593582 ZDHHC21Q8IVQ6 265 aa13.07□□□□□ -0.32
TRIM28-203ENST00000593582 ZNF101Q8IZC7 436 aa13.07□□□□□ -0.32
TRIM28-203ENST00000593582 ARHGAP24Q8N264 748 aa13.07□□□□□ -0.32
TRIM28-203ENST00000593582 FANK1Q8TC84 345 aa13.07□□□□□ -0.32
TRIM28-203ENST00000593582 RDH5Q92781 318 aa13.07□□□□□ -0.32
TRIM28-203ENST00000593582 MSI2Q96DH6 328 aaKnown RBP13.07□□□□□ -0.32
TRIM28-203ENST00000593582 CHODLQ9H9P2 273 aa13.07□□□□□ -0.32
TRIM28-203ENST00000593582 ACTR3BQ9P1U1 418 aa13.07□□□□□ -0.32
TRIM28-203ENST00000593582 NDRG4Q9ULP0 352 aaKnown RBP13.07□□□□□ -0.32
TRIM28-203ENST00000593582 CUBNO60494 3623 aa13.07□□□□□ -0.32
TRIM28-203ENST00000593582 LRP5LA4QPB2 252 aa13.06□□□□□ -0.32
TRIM28-203ENST00000593582 C17orf100A8MU93 164 aa13.06□□□□□ -0.32
TRIM28-203ENST00000593582 KIAA1324LA8MWY0 1029 aaPredicted RBP13.06□□□□□ -0.32
TRIM28-203ENST00000593582 LMX1BO60663 402 aa13.06□□□□□ -0.32
TRIM28-203ENST00000593582 KRT36O76013 467 aa13.06□□□□□ -0.32
TRIM28-203ENST00000593582 TXNDC12O95881 172 aa13.06□□□□□ -0.32
TRIM28-203ENST00000593582 IGHV3-13P01766 116 aa13.06□□□□□ -0.32
TRIM28-203ENST00000593582 SCG5P05408 212 aa13.06□□□□□ -0.32
TRIM28-203ENST00000593582 TACSTD2P09758 323 aa13.06□□□□□ -0.32
TRIM28-203ENST00000593582 ACHEP22303 614 aa13.06□□□□□ -0.32
TRIM28-203ENST00000593582 CALB2P22676 271 aa13.06□□□□□ -0.32
TRIM28-203ENST00000593582 FPR3P25089 353 aa13.06□□□□□ -0.32
TRIM28-203ENST00000593582 SLC6A6P31641 620 aa13.06□□□□□ -0.32
TRIM28-203ENST00000593582 ARHGDIAP52565 204 aa13.06□□□□□ -0.32
TRIM28-203ENST00000593582 MRPS11P82912 194 aaKnown RBP13.06□□□□□ -0.32
TRIM28-203ENST00000593582 RFX4Q33E94 735 aa13.06□□□□□ -0.32
TRIM28-203ENST00000593582 MTX3Q5HYI7 312 aa13.06□□□□□ -0.32
TRIM28-203ENST00000593582 SPATA46Q5T0L3 261 aa13.06□□□□□ -0.32
TRIM28-203ENST00000593582 DNM1P34Q6PK57 102 aa13.06□□□□□ -0.32
TRIM28-203ENST00000593582 ABHD4Q8TB40 342 aa13.06□□□□□ -0.32
TRIM28-203ENST00000593582 HPS1Q92902 700 aa13.06□□□□□ -0.32
TRIM28-203ENST00000593582 ERMAPQ96PL5 475 aaPredicted RBP13.06□□□□□ -0.32
TRIM28-203ENST00000593582 SNX18Q96RF0 628 aa13.06□□□□□ -0.32
TRIM28-203ENST00000593582 BEX2Q9BXY8 128 aa13.06□□□□□ -0.32
TRIM28-203ENST00000593582 OR52D1Q9H346 318 aa13.06□□□□□ -0.32
TRIM28-203ENST00000593582 ELOVL3Q9HB03 270 aa13.06□□□□□ -0.32
TRIM28-203ENST00000593582 TMEM160Q9NX00 188 aa13.06□□□□□ -0.32
TRIM28-203ENST00000593582 KCNS2Q9ULS6 477 aa13.06□□□□□ -0.32
TRIM28-203ENST00000593582 COA3Q9Y2R0 106 aaPredicted RBP13.06□□□□□ -0.32
TRIM28-203ENST00000593582 PLSCR5A0PG75 271 aa13.05□□□□□ -0.32
TRIM28-203ENST00000593582 IMPA2O14732 288 aa13.05□□□□□ -0.32
TRIM28-203ENST00000593582 SGCEO43556 437 aa13.05□□□□□ -0.32
TRIM28-203ENST00000593582 DOK2O60496 412 aa13.05□□□□□ -0.32
TRIM28-203ENST00000593582 ICMTO60725 284 aa13.05□□□□□ -0.32
TRIM28-203ENST00000593582 LILRA1O75019 489 aa13.05□□□□□ -0.32
TRIM28-203ENST00000593582 NCR1O76036 304 aa13.05□□□□□ -0.32
TRIM28-203ENST00000593582 PPP1R3DO95685 299 aa13.05□□□□□ -0.32
TRIM28-203ENST00000593582 IFNA2P01563 188 aa13.05□□□□□ -0.32
TRIM28-203ENST00000593582 COX5BP10606 129 aa13.05□□□□□ -0.32
TRIM28-203ENST00000593582 COL8A2P25067 703 aa13.05□□□□□ -0.32
TRIM28-203ENST00000593582 NOS3P29474 1203 aa13.05□□□□□ -0.32
TRIM28-203ENST00000593582 CRABP1P29762 137 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms