RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 TAS2R50P59544 299 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 GMFBP60983 142 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 RAB8AP61006 207 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 ACTA2P62736 377 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 TRA2BP62995 288 aaKnown RBP3.73□□□□□ -1.81
LIG3-211ENST00000588713 ACTG2P63267 376 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 PMPCAQ10713 525 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 ST3GAL3Q11203 375 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 SNTB2Q13425 540 aaKnown RBP3.73□□□□□ -1.81
LIG3-211ENST00000588713 NAE1Q13564 534 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 SLC9A5Q14940 896 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 PTPRRQ15256 657 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 ZMYND11Q15326 602 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 RBMS2Q15434 407 aaKnown RBP3.73□□□□□ -1.81
LIG3-211ENST00000588713 LTB4RQ15722 352 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 DECR1Q16698 335 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 MICBQ29980 383 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 SPDYE7PQ495Y7 208 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 ZNF311Q5JNZ3 666 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 WIPI1Q5MNZ9 446 aaPredicted RBP3.73□□□□□ -1.81
LIG3-211ENST00000588713 ATXN7L2Q5T6C5 722 aaPredicted RBP3.73□□□□□ -1.81
LIG3-211ENST00000588713 ELP2Q6IA86 826 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 DHRS7BQ6IAN0 325 aaPredicted RBP3.73□□□□□ -1.81
LIG3-211ENST00000588713 OR5M10Q6IEU7 315 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 TNFAIP8L2Q6P589 184 aaPredicted RBP3.73□□□□□ -1.81
LIG3-211ENST00000588713 ALKAL2Q6UX46 152 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 C17orf107Q6ZR85 190 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 Q6ZTK2 550 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 LINGO2Q7L985 606 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 LHFPL3Q86UP9 236 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 VRK3Q8IV63 474 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 SKA3Q8IX90 412 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 SVBPQ8N300 66 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 ACBD7Q8N6N7 88 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 DNAAF1Q8NEP3 725 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 OR52L1Q8NGH7 329 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 OR8K3Q8NH51 312 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 COQ8AQ8NI60 647 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 LGALS14Q8TCE9 139 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 SLC2A12Q8TD20 617 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 THEM6Q8WUY1 208 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 PCNPQ8WW12 178 aaKnown RBP3.73□□□□□ -1.81
LIG3-211ENST00000588713 SLC5A11Q8WWX8 675 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 RAB40AQ8WXH6 277 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 ACOT11Q8WXI4 607 aaPredicted RBP3.73□□□□□ -1.81
LIG3-211ENST00000588713 KISS1RQ969F8 398 aaPredicted RBP3.73□□□□□ -1.81
LIG3-211ENST00000588713 SMIM19Q96E16 107 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 MRPL48Q96GC5 212 aaKnown RBP3.73□□□□□ -1.81
LIG3-211ENST00000588713 PGLYRP3Q96LB9 341 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 C10orf90Q96M02 699 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 OR2M4Q96R27 311 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 BBS4Q96RK4 519 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 LMF1Q96S06 567 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 ZNF251Q9BRH9 671 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 GINS4Q9BRT9 223 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 ARL6Q9H0F7 186 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 AUNIPQ9H7T9 357 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 DDX31Q9H8H2 851 aaKnown RBP3.73□□□□□ -1.81
LIG3-211ENST00000588713 RNF122Q9H9V4 155 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 SRA1Q9HD15 236 aaKnown RBP3.73□□□□□ -1.81
LIG3-211ENST00000588713 HRASLSQ9HDD0 168 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 HINT3Q9NQE9 182 aaKnown RBP3.73□□□□□ -1.81
LIG3-211ENST00000588713 KLHL1Q9NR64 748 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 CA10Q9NS85 328 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 RASL12Q9NYN1 266 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 AHSPQ9NZD4 102 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 OR6C2Q9NZP2 312 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 CALML5Q9NZT1 146 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 MYEF2Q9P2K5 600 aaKnown RBP3.73□□□□□ -1.81
LIG3-211ENST00000588713 CPNE7Q9UBL6 633 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 LPAR3Q9UBY5 353 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 ZNF69Q9UC07 566 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 MLXQ9UH92 298 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 RCE1Q9Y256 329 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 MRPS7Q9Y2R9 242 aaKnown RBP3.73□□□□□ -1.81
LIG3-211ENST00000588713 GPR52Q9Y2T5 361 aa3.73□□□□□ -1.81
LIG3-211ENST00000588713 CARHSP1Q9Y2V2 147 aaKnown RBP3.73□□□□□ -1.81
LIG3-211ENST00000588713 NUP214P35658 2090 aaPredicted RBP3.73□□□□□ -1.81
LIG3-211ENST00000588713 RYR2Q92736 4967 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 A0A087WUU8 490 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 A0A0D9SG52 128 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 A0A0G2JPF8 293 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 TCRBV16S1A1N1A0A5B0 115 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 SLC5A10A0PJK1 596 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 DAPL1A0PJW8 107 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 CDHR4A6H8M9 788 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 FAM74A7A6NL05 159 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 RFPL4AA6NLU0 287 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 ANXA2P2A6NMY6 339 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 HNRNPCL2B2RXH8 293 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 HNRNPCL3B7ZW38 293 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 RFPL4AL1F8VTS6 287 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 ACOT7O00154 380 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 SULT1C2O00338 296 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 IMPA2O14732 288 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 ARPC5O15511 151 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 BCL2L11O43521 198 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 TCF21O43680 179 aa3.72□□□□□ -1.81
LIG3-211ENST00000588713 GATCO43716 136 aaKnown RBP3.72□□□□□ -1.81
LIG3-211ENST00000588713 GPRIN2O60269 458 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms