RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 OR8B4Q96RC9 309 aa12.06□□□□□ -0.48
CCDC40-209ENST00000573474 ABHD6Q9BV23 337 aa12.06□□□□□ -0.48
CCDC40-209ENST00000573474 TMEM38BQ9NVV0 291 aa12.06□□□□□ -0.48
CCDC40-209ENST00000573474 MRM2Q9UI43 246 aaKnown RBP12.06□□□□□ -0.48
CCDC40-209ENST00000573474 IKZF2Q9UKS7 526 aa12.06□□□□□ -0.48
CCDC40-209ENST00000573474 ZNF835Q9Y2P0 537 aa12.06□□□□□ -0.48
CCDC40-209ENST00000573474 POLR1DQ9Y2S0 133 aa12.06□□□□□ -0.48
CCDC40-209ENST00000573474 TTLL8A6PVC2 850 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 HSPB2A8KAH6 182 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 PRR32B1ATL7 298 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 ZNF701M0R085 212 aaPredicted RBP12.05□□□□□ -0.48
CCDC40-209ENST00000573474 NOL3O60936 208 aaKnown RBP12.05□□□□□ -0.48
CCDC40-209ENST00000573474 LALBAP00709 142 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 IGHV3-9P01782 118 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 CRHP06850 196 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 EDN3P14138 238 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 TIMP3P35625 211 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 RBPJQ06330 500 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 HSPB2Q16082 182 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 SSX1Q16384 188 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 EIF2S3LQ2VIR3 472 aaKnown RBP12.05□□□□□ -0.48
CCDC40-209ENST00000573474 NRN1LQ496H8 165 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 FAM27BQ5VT28 67 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 LIPKQ5VXJ0 399 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 DEGS2Q6QHC5 323 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 P2RY8Q86VZ1 359 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 LINC00346Q8IVM7 164 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 ZNF679Q8IYX0 411 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 GCNT2Q8N0V5 402 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 UBE2J2Q8N2K1 259 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 YIPF7Q8N8F6 280 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 OR6K3Q8NGY3 331 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 OR52N5Q8NH56 324 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 ST7LQ8TDW4 575 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 PELI1Q96FA3 418 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 WBP1Q96G27 269 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 ZFP3Q96NJ6 502 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 AMELYQ99218 206 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 FOXB1Q99853 325 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 ZNF416Q9BWM5 594 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 MROQ9BYG7 248 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 TP63Q9H3D4 680 aaPredicted RBP12.05□□□□□ -0.48
CCDC40-209ENST00000573474 C1orf198Q9H425 327 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 C12orf49Q9H741 205 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 SLCO1C1Q9NYB5 712 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 RSL24D1Q9UHA3 163 aaKnown RBP12.05□□□□□ -0.48
CCDC40-209ENST00000573474 GDF2Q9UK05 429 aaPredicted RBP12.05□□□□□ -0.48
CCDC40-209ENST00000573474 FAM215AQ9Y5M1 114 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 LHFPL6Q9Y693 200 aa12.05□□□□□ -0.48
CCDC40-209ENST00000573474 PRRC2CQ9Y520 2896 aaKnown RBP12.04□□□□□ -0.48
CCDC40-209ENST00000573474 E9PI62 339 aa12.04□□□□□ -0.48
CCDC40-209ENST00000573474 PSMD9O00233 223 aa12.04□□□□□ -0.48
CCDC40-209ENST00000573474 ZNF254O75437 659 aa12.04□□□□□ -0.48
CCDC40-209ENST00000573474 ABHD16AO95870 558 aa12.04□□□□□ -0.48
CCDC40-209ENST00000573474 CST2P09228 141 aa12.04□□□□□ -0.48
CCDC40-209ENST00000573474 OR8G3PP0DMU2 310 aa12.04□□□□□ -0.48
CCDC40-209ENST00000573474 KIR2DL2P43627 348 aaPredicted RBP12.04□□□□□ -0.48
CCDC40-209ENST00000573474 PER3P56645 1201 aa12.04□□□□□ -0.48
CCDC40-209ENST00000573474 SIRPAP78324 504 aa12.04□□□□□ -0.48
CCDC40-209ENST00000573474 ARF1P84077 181 aaKnown RBP12.04□□□□□ -0.48
CCDC40-209ENST00000573474 FAPQ12884 760 aa12.04□□□□□ -0.48
CCDC40-209ENST00000573474 LY6DQ14210 128 aa12.04□□□□□ -0.48
CCDC40-209ENST00000573474 ENDOGQ14249 297 aaKnown RBP12.04□□□□□ -0.48
CCDC40-209ENST00000573474 CCDC58Q4VC31 144 aa12.04□□□□□ -0.48
CCDC40-209ENST00000573474 FBXW9Q5XUX1 488 aa12.04□□□□□ -0.48
CCDC40-209ENST00000573474 RPL22L1Q6P5R6 122 aaKnown RBP12.04□□□□□ -0.48
CCDC40-209ENST00000573474 CORO6Q6QEF8 472 aa12.04□□□□□ -0.48
CCDC40-209ENST00000573474 SEM1Q6ZVN7 128 aa12.04□□□□□ -0.48
CCDC40-209ENST00000573474 KRT77Q7Z794 578 aa12.04□□□□□ -0.48
CCDC40-209ENST00000573474 ATCAYQ86WG3 371 aa12.04□□□□□ -0.48
CCDC40-209ENST00000573474 DOLPP1Q86YN1 238 aa12.04□□□□□ -0.48
CCDC40-209ENST00000573474 PHC2Q8IXK0 858 aa12.04□□□□□ -0.48
CCDC40-209ENST00000573474 CNEP1R1Q8N9A8 125 aa12.04□□□□□ -0.48
CCDC40-209ENST00000573474 RAB2BQ8WUD1 216 aa12.04□□□□□ -0.48
CCDC40-209ENST00000573474 RNF133Q8WVZ7 376 aa12.04□□□□□ -0.48
CCDC40-209ENST00000573474 HTRA1Q92743 480 aa12.04□□□□□ -0.48
CCDC40-209ENST00000573474 ISOC1Q96CN7 298 aa12.04□□□□□ -0.48
CCDC40-209ENST00000573474 SLAMF6Q96DU3 332 aa12.04□□□□□ -0.48
CCDC40-209ENST00000573474 BCL7BQ9BQE9 202 aa12.04□□□□□ -0.48
CCDC40-209ENST00000573474 WACQ9BTA9 647 aa12.04□□□□□ -0.48
CCDC40-209ENST00000573474 NAA50Q9GZZ1 169 aaKnown RBP12.04□□□□□ -0.48
CCDC40-209ENST00000573474 ELOVL3Q9HB03 270 aa12.04□□□□□ -0.48
CCDC40-209ENST00000573474 ACOXLQ9NUZ1 547 aa12.04□□□□□ -0.48
CCDC40-209ENST00000573474 NDUFB11Q9NX14 153 aa12.04□□□□□ -0.48
CCDC40-209ENST00000573474 ASH2LQ9UBL3 628 aa12.04□□□□□ -0.48
CCDC40-209ENST00000573474 PRSS50Q9UI38 385 aa12.04□□□□□ -0.48
CCDC40-209ENST00000573474 ENPP5Q9UJA9 477 aa12.04□□□□□ -0.48
CCDC40-209ENST00000573474 DSPP15924 2871 aaKnown RBP12.03□□□□□ -0.48
CCDC40-209ENST00000573474 OGG1O15527 345 aa12.03□□□□□ -0.48
CCDC40-209ENST00000573474 SLC19A2O60779 497 aa12.03□□□□□ -0.48
CCDC40-209ENST00000573474 FARS2O95363 451 aaKnown RBP12.03□□□□□ -0.48
CCDC40-209ENST00000573474 CNOT4O95628 575 aaKnown RBP12.03□□□□□ -0.48
CCDC40-209ENST00000573474 IL2RAP01589 272 aa12.03□□□□□ -0.48
CCDC40-209ENST00000573474 TMIGD3P0DMS9 266 aaPredicted RBP12.03□□□□□ -0.48
CCDC40-209ENST00000573474 CD53P19397 219 aa12.03□□□□□ -0.48
CCDC40-209ENST00000573474 CELP19835 753 aa12.03□□□□□ -0.48
CCDC40-209ENST00000573474 GADD45AP24522 165 aa12.03□□□□□ -0.48
CCDC40-209ENST00000573474 MPGP29372 298 aa12.03□□□□□ -0.48
CCDC40-209ENST00000573474 TGM4P49221 684 aa12.03□□□□□ -0.48
CCDC40-209ENST00000573474 GTF2A1P52655 376 aaPredicted RBP12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms