RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 SLC26A10Q8NG04 563 aa16.94■□□□□ 0.3
CLN3-225ENST00000566824 PTP4A1Q93096 173 aa16.94■□□□□ 0.3
CLN3-225ENST00000566824 OR2H1Q9GZK4 316 aa16.94■□□□□ 0.3
CLN3-225ENST00000566824 CCNB1IP1Q9NPC3 277 aa16.94■□□□□ 0.3
CLN3-225ENST00000566824 ST6GALNAC2Q9UJ37 374 aa16.94■□□□□ 0.3
CLN3-225ENST00000566824 TVP23AA6NH52 213 aa16.93■□□□□ 0.3
CLN3-225ENST00000566824 RIIAD1A6NNX1 92 aa16.93■□□□□ 0.3
CLN3-225ENST00000566824 ATE1O95260 518 aa16.93■□□□□ 0.3
CLN3-225ENST00000566824 ALPLP05186 524 aa16.93■□□□□ 0.3
CLN3-225ENST00000566824 ZNF35P13682 527 aa16.93■□□□□ 0.3
CLN3-225ENST00000566824 SPI1P17947 270 aa16.93■□□□□ 0.3
CLN3-225ENST00000566824 DAG1Q14118 895 aa16.93■□□□□ 0.3
CLN3-225ENST00000566824 DNM1P34Q6PK57 102 aa16.93■□□□□ 0.3
CLN3-225ENST00000566824 BBS1Q8NFJ9 593 aa16.93■□□□□ 0.3
CLN3-225ENST00000566824 STMN2Q93045 179 aa16.93■□□□□ 0.3
CLN3-225ENST00000566824 CISD1Q9NZ45 108 aaKnown RBP16.93■□□□□ 0.3
CLN3-225ENST00000566824 LHFPL6Q9Y693 200 aa16.93■□□□□ 0.3
CLN3-225ENST00000566824 LOC100509620A0A075B734 347 aa16.92■□□□□ 0.3
CLN3-225ENST00000566824 ZAR1LA6NP61 321 aa16.92■□□□□ 0.3
CLN3-225ENST00000566824 IFNGP01579 166 aa16.92■□□□□ 0.3
CLN3-225ENST00000566824 CRYAAP02489 173 aa16.92■□□□□ 0.3
CLN3-225ENST00000566824 SOD3P08294 240 aa16.92■□□□□ 0.3
CLN3-225ENST00000566824 CD53P19397 219 aa16.92■□□□□ 0.3
CLN3-225ENST00000566824 RPS27P42677 84 aaKnown RBP16.92■□□□□ 0.3
CLN3-225ENST00000566824 SLC25A1P53007 311 aa16.92■□□□□ 0.3
CLN3-225ENST00000566824 ESRRGP62508 458 aa16.92■□□□□ 0.3
CLN3-225ENST00000566824 ELF3P78545 371 aaPredicted RBP16.92■□□□□ 0.3
CLN3-225ENST00000566824 TEKQ02763 1124 aa16.92■□□□□ 0.3
CLN3-225ENST00000566824 HSF2Q03933 536 aa16.92■□□□□ 0.3
CLN3-225ENST00000566824 CORO6Q6QEF8 472 aa16.92■□□□□ 0.3
CLN3-225ENST00000566824 DPPA2Q7Z7J5 298 aa16.92■□□□□ 0.3
CLN3-225ENST00000566824 ZNF611Q8N823 705 aa16.92■□□□□ 0.3
CLN3-225ENST00000566824 ZNF511Q8NB15 262 aa16.92■□□□□ 0.3
CLN3-225ENST00000566824 PROKR2Q8NFJ6 384 aa16.92■□□□□ 0.3
CLN3-225ENST00000566824 IGFBPL1Q8WX77 278 aa16.92■□□□□ 0.3
CLN3-225ENST00000566824 OTULINQ96BN8 352 aa16.92■□□□□ 0.3
CLN3-225ENST00000566824 KCNN2Q9H2S1 579 aa16.92■□□□□ 0.3
CLN3-225ENST00000566824 RIBC2Q9H4K1 309 aa16.92■□□□□ 0.3
CLN3-225ENST00000566824 HINT3Q9NQE9 182 aaKnown RBP16.92■□□□□ 0.3
CLN3-225ENST00000566824 TVP23BQ9NYZ1 205 aa16.92■□□□□ 0.3
CLN3-225ENST00000566824 USE1Q9NZ43 259 aa16.92■□□□□ 0.3
CLN3-225ENST00000566824 ASH2LQ9UBL3 628 aa16.92■□□□□ 0.3
CLN3-225ENST00000566824 POU2F3Q9UKI9 436 aa16.92■□□□□ 0.3
CLN3-225ENST00000566824 USF3Q68DE3 2245 aa16.91■□□□□ 0.3
CLN3-225ENST00000566824 MAP1AP78559 2803 aaPredicted RBP16.91■□□□□ 0.3
CLN3-225ENST00000566824 C12orf71A8MTZ7 269 aa16.91■□□□□ 0.3
CLN3-225ENST00000566824 DANCRP0C864 163 aa16.91■□□□□ 0.3
CLN3-225ENST00000566824 ANPEPP15144 967 aa16.91■□□□□ 0.3
CLN3-225ENST00000566824 ZNF3P17036 446 aa16.91■□□□□ 0.3
CLN3-225ENST00000566824 PAX7P23759 505 aa16.91■□□□□ 0.3
CLN3-225ENST00000566824 GUCA1AP43080 201 aaPredicted RBP16.91■□□□□ 0.3
CLN3-225ENST00000566824 RCN1Q15293 331 aa16.91■□□□□ 0.3
CLN3-225ENST00000566824 MSMPQ1L6U9 139 aa16.91■□□□□ 0.3
CLN3-225ENST00000566824 LINC01590Q5TEZ4 76 aa16.91■□□□□ 0.3
CLN3-225ENST00000566824 SLX4IPQ5VYV7 408 aa16.91■□□□□ 0.3
CLN3-225ENST00000566824 PLBD1Q6P4A8 553 aa16.91■□□□□ 0.3
CLN3-225ENST00000566824 CPOQ8IVL8 374 aa16.91■□□□□ 0.3
CLN3-225ENST00000566824 LINC00346Q8IVM7 164 aa16.91■□□□□ 0.3
CLN3-225ENST00000566824 SLC30A7Q8NEW0 376 aa16.91■□□□□ 0.3
CLN3-225ENST00000566824 OR2T4Q8NH00 348 aa16.91■□□□□ 0.3
CLN3-225ENST00000566824 FBXW5Q969U6 566 aa16.91■□□□□ 0.3
CLN3-225ENST00000566824 RBM4BQ9BQ04 359 aaKnown RBP16.91■□□□□ 0.3
CLN3-225ENST00000566824 GABARAPL3Q9BY60 117 aa16.91■□□□□ 0.3
CLN3-225ENST00000566824 WDR76Q9H967 626 aa16.91■□□□□ 0.3
CLN3-225ENST00000566824 MOV10Q9HCE1 1003 aaKnown RBP16.91■□□□□ 0.3
CLN3-225ENST00000566824 TIMM10BQ9Y5J6 103 aa16.91■□□□□ 0.3
CLN3-225ENST00000566824 RER1O15258 196 aa16.9■□□□□ 0.3
CLN3-225ENST00000566824 PRKYO43930 277 aa16.9■□□□□ 0.3
CLN3-225ENST00000566824 CD8AP01732 235 aa16.9■□□□□ 0.3
CLN3-225ENST00000566824 HMGN1P05114 100 aa16.9■□□□□ 0.3
CLN3-225ENST00000566824 GGT2P36268 569 aa16.9■□□□□ 0.3
CLN3-225ENST00000566824 LSM6P62312 80 aaKnown RBP16.9■□□□□ 0.3
CLN3-225ENST00000566824 GLO1Q04760 184 aa16.9■□□□□ 0.3
CLN3-225ENST00000566824 ZIK1Q3SY52 487 aaPredicted RBP16.9■□□□□ 0.3
CLN3-225ENST00000566824 CCDC92Q53HC0 331 aaPredicted RBP16.9■□□□□ 0.3
CLN3-225ENST00000566824 C12orf73Q69YU5 71 aa16.9■□□□□ 0.3
CLN3-225ENST00000566824 KRT80Q6KB66 452 aa16.9■□□□□ 0.3
CLN3-225ENST00000566824 BCDIN3DQ7Z5W3 292 aaKnown RBP16.9■□□□□ 0.3
CLN3-225ENST00000566824 SMAP2Q8WU79 429 aaPredicted RBP16.9■□□□□ 0.3
CLN3-225ENST00000566824 POM121L2Q96KW2 1035 aa16.9■□□□□ 0.3
CLN3-225ENST00000566824 AKAP9Q99996 3911 aa16.9■□□□□ 0.3
CLN3-225ENST00000566824 GPRIN2O60269 458 aa16.89■□□□□ 0.29
CLN3-225ENST00000566824 HLA-DQA2P01906 255 aa16.89■□□□□ 0.29
CLN3-225ENST00000566824 RAF1P04049 648 aa16.89■□□□□ 0.29
CLN3-225ENST00000566824 THBS4P35443 961 aa16.89■□□□□ 0.29
CLN3-225ENST00000566824 ALDH3A2P51648 485 aa16.89■□□□□ 0.29
CLN3-225ENST00000566824 PCBD1P61457 104 aa16.89■□□□□ 0.29
CLN3-225ENST00000566824 HIST1H3AP68431 136 aa16.89■□□□□ 0.29
CLN3-225ENST00000566824 NKX6-1P78426 367 aaPredicted RBP16.89■□□□□ 0.29
CLN3-225ENST00000566824 EFNB1P98172 346 aa16.89■□□□□ 0.29
CLN3-225ENST00000566824 AQP6Q13520 282 aa16.89■□□□□ 0.29
CLN3-225ENST00000566824 SNAPC1Q16533 368 aa16.89■□□□□ 0.29
CLN3-225ENST00000566824 HIST2H3PS2Q5TEC6 136 aa16.89■□□□□ 0.29
CLN3-225ENST00000566824 VHLLQ6RSH7 139 aa16.89■□□□□ 0.29
CLN3-225ENST00000566824 HIST2H3AQ71DI3 136 aa16.89■□□□□ 0.29
CLN3-225ENST00000566824 VASH1Q7L8A9 365 aaPredicted RBP16.89■□□□□ 0.29
CLN3-225ENST00000566824 DEPDC4Q8N2C3 294 aa16.89■□□□□ 0.29
CLN3-225ENST00000566824 SLC7A6Q92536 515 aa16.89■□□□□ 0.29
CLN3-225ENST00000566824 MBOAT4Q96T53 435 aa16.89■□□□□ 0.29
CLN3-225ENST00000566824 DHRS9Q9BPW9 319 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms