RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 ZNF774Q6NX45 483 aa12.68□□□□□ -0.38
CLN3-213ENST00000565047 RFPL4BQ6ZWI9 263 aa12.68□□□□□ -0.38
CLN3-213ENST00000565047 ZER1Q7Z7L7 766 aa12.68□□□□□ -0.38
CLN3-213ENST00000565047 CYP4Z1Q86W10 505 aa12.68□□□□□ -0.38
CLN3-213ENST00000565047 PGAM4Q8N0Y7 254 aa12.68□□□□□ -0.38
CLN3-213ENST00000565047 OR1J1Q8NGS3 322 aa12.68□□□□□ -0.38
CLN3-213ENST00000565047 SNX18Q96RF0 628 aa12.68□□□□□ -0.38
CLN3-213ENST00000565047 WACQ9BTA9 647 aa12.68□□□□□ -0.38
CLN3-213ENST00000565047 BEX2Q9BXY8 128 aa12.68□□□□□ -0.38
CLN3-213ENST00000565047 KCNN2Q9H2S1 579 aa12.68□□□□□ -0.38
CLN3-213ENST00000565047 ZNF275Q9NSD4 429 aaPredicted RBP12.68□□□□□ -0.38
CLN3-213ENST00000565047 SLCO1C1Q9NYB5 712 aa12.68□□□□□ -0.38
CLN3-213ENST00000565047 ADA2Q9NZK5 511 aa12.68□□□□□ -0.38
CLN3-213ENST00000565047 VSX1Q9NZR4 365 aaPredicted RBP12.68□□□□□ -0.38
CLN3-213ENST00000565047 GRHPRQ9UBQ7 328 aa12.68□□□□□ -0.38
CLN3-213ENST00000565047 KCNS2Q9ULS6 477 aa12.68□□□□□ -0.38
CLN3-213ENST00000565047 TEX13CA0A0J9YWL9 993 aa12.67□□□□□ -0.38
CLN3-213ENST00000565047 A0A1W2PPW3 197 aa12.67□□□□□ -0.38
CLN3-213ENST00000565047 NDUFB2O95178 105 aa12.67□□□□□ -0.38
CLN3-213ENST00000565047 IFNA2P01563 188 aa12.67□□□□□ -0.38
CLN3-213ENST00000565047 SDHAP31040 664 aa12.67□□□□□ -0.38
CLN3-213ENST00000565047 MSX2P35548 267 aaPredicted RBP12.67□□□□□ -0.38
CLN3-213ENST00000565047 CRYBB2P43320 205 aa12.67□□□□□ -0.38
CLN3-213ENST00000565047 LMO4P61968 165 aa12.67□□□□□ -0.38
CLN3-213ENST00000565047 IL17RELQ6ZVW7 336 aa12.67□□□□□ -0.38
CLN3-213ENST00000565047 PTCHD4Q6ZW05 846 aa12.67□□□□□ -0.38
CLN3-213ENST00000565047 CPLX4Q7Z7G2 160 aa12.67□□□□□ -0.38
CLN3-213ENST00000565047 LINC01356Q8N9X3 169 aa12.67□□□□□ -0.38
CLN3-213ENST00000565047 CLDND2Q8NHS1 167 aa12.67□□□□□ -0.38
CLN3-213ENST00000565047 RASD2Q96D21 266 aa12.67□□□□□ -0.38
CLN3-213ENST00000565047 PYURFQ96I23 114 aa12.67□□□□□ -0.38
CLN3-213ENST00000565047 SHARPINQ9H0F6 387 aa12.67□□□□□ -0.38
CLN3-213ENST00000565047 ADH4P08319 380 aa12.66□□□□□ -0.38
CLN3-213ENST00000565047 COX5BP10606 129 aa12.66□□□□□ -0.38
CLN3-213ENST00000565047 CCNOP22674 350 aa12.66□□□□□ -0.38
CLN3-213ENST00000565047 RPL4P36578 427 aaKnown RBP12.66□□□□□ -0.38
CLN3-213ENST00000565047 CDKN2AP42771 156 aaKnown RBP12.66□□□□□ -0.38
CLN3-213ENST00000565047 GDI2P50395 445 aaKnown RBP12.66□□□□□ -0.38
CLN3-213ENST00000565047 PCBD1P61457 104 aa12.66□□□□□ -0.38
CLN3-213ENST00000565047 CCL8P80075 99 aa12.66□□□□□ -0.38
CLN3-213ENST00000565047 NKPD1Q17RQ9 610 aa12.66□□□□□ -0.38
CLN3-213ENST00000565047 DPY19L2P2Q6ZN68 376 aa12.66□□□□□ -0.38
CLN3-213ENST00000565047 RRM2BQ7LG56 351 aa12.66□□□□□ -0.38
CLN3-213ENST00000565047 OR52J3Q8NH60 311 aa12.66□□□□□ -0.38
CLN3-213ENST00000565047 SLC25A40Q8TBP6 338 aa12.66□□□□□ -0.38
CLN3-213ENST00000565047 KLF14Q8TD94 323 aaPredicted RBP12.66□□□□□ -0.38
CLN3-213ENST00000565047 IPCEF1Q8WWN9 437 aaPredicted RBP12.66□□□□□ -0.38
CLN3-213ENST00000565047 RSRC1Q96IZ7 334 aaKnown RBP12.66□□□□□ -0.38
CLN3-213ENST00000565047 C4orf45Q96LM5 186 aa12.66□□□□□ -0.38
CLN3-213ENST00000565047 ZNF570Q96NI8 536 aa12.66□□□□□ -0.38
CLN3-213ENST00000565047 CDRT15Q96T59 188 aa12.66□□□□□ -0.38
CLN3-213ENST00000565047 OR2J1Q9GZK6 312 aa12.66□□□□□ -0.38
CLN3-213ENST00000565047 EMC7Q9NPA0 242 aa12.66□□□□□ -0.38
CLN3-213ENST00000565047 IL20RAQ9UHF4 553 aa12.66□□□□□ -0.38
CLN3-213ENST00000565047 TAGLN3Q9UI15 199 aa12.66□□□□□ -0.38
CLN3-213ENST00000565047 ARL2BPQ9Y2Y0 163 aa12.66□□□□□ -0.38
CLN3-213ENST00000565047 FAM32AQ9Y421 112 aaKnown RBP12.66□□□□□ -0.38
CLN3-213ENST00000565047 ANK2Q01484 3957 aa12.65□□□□□ -0.38
CLN3-213ENST00000565047 A0A1W2PPL8 197 aa12.65□□□□□ -0.38
CLN3-213ENST00000565047 C12orf71A8MTZ7 269 aa12.65□□□□□ -0.38
CLN3-213ENST00000565047 FAM157AC9JC47 383 aa12.65□□□□□ -0.38
CLN3-213ENST00000565047 H3BSA7 217 aa12.65□□□□□ -0.38
CLN3-213ENST00000565047 DCTN6O00399 190 aa12.65□□□□□ -0.38
CLN3-213ENST00000565047 ARPC2O15144 300 aa12.65□□□□□ -0.38
CLN3-213ENST00000565047 MPZL1O95297 269 aa12.65□□□□□ -0.38
CLN3-213ENST00000565047 GPR6P46095 362 aaPredicted RBP12.65□□□□□ -0.38
CLN3-213ENST00000565047 SELENOVP59797 346 aa12.65□□□□□ -0.38
CLN3-213ENST00000565047 KRR1Q13601 381 aaKnown RBP12.65□□□□□ -0.38
CLN3-213ENST00000565047 KCNMB1Q16558 191 aa12.65□□□□□ -0.38
CLN3-213ENST00000565047 CR1LQ2VPA4 569 aa12.65□□□□□ -0.38
CLN3-213ENST00000565047 PCGF3Q3KNV8 242 aa12.65□□□□□ -0.38
CLN3-213ENST00000565047 ZNF718Q3SXZ3 478 aa12.65□□□□□ -0.38
CLN3-213ENST00000565047 FGD3Q5JSP0 725 aa12.65□□□□□ -0.38
CLN3-213ENST00000565047 SAMD4BQ5PRF9 694 aaKnown RBP12.65□□□□□ -0.38
CLN3-213ENST00000565047 SPATA46Q5T0L3 261 aa12.65□□□□□ -0.38
CLN3-213ENST00000565047 GPR139Q6DWJ6 353 aa12.65□□□□□ -0.38
CLN3-213ENST00000565047 VASH1Q7L8A9 365 aaPredicted RBP12.65□□□□□ -0.38
CLN3-213ENST00000565047 PHC2Q8IXK0 858 aa12.65□□□□□ -0.38
CLN3-213ENST00000565047 C1orf174Q8IYL3 243 aa12.65□□□□□ -0.38
CLN3-213ENST00000565047 ALDH16A1Q8IZ83 802 aa12.65□□□□□ -0.38
CLN3-213ENST00000565047 LRRC37BQ96QE4 947 aa12.65□□□□□ -0.38
CLN3-213ENST00000565047 NSRP1Q9H0G5 558 aaKnown RBP12.65□□□□□ -0.38
CLN3-213ENST00000565047 SYT4Q9H2B2 425 aa12.65□□□□□ -0.38
CLN3-213ENST00000565047 POFUT1Q9H488 388 aa12.65□□□□□ -0.38
CLN3-213ENST00000565047 IL1RAPQ9NPH3 570 aa12.65□□□□□ -0.38
CLN3-213ENST00000565047 GPR160Q9UJ42 338 aa12.65□□□□□ -0.38
CLN3-213ENST00000565047 MAGEL2Q9UJ55 1249 aa12.65□□□□□ -0.38
CLN3-213ENST00000565047 IER3IP1Q9Y5U9 82 aa12.65□□□□□ -0.38
CLN3-213ENST00000565047 CACNG2Q9Y698 323 aa12.65□□□□□ -0.38
CLN3-213ENST00000565047 UNC119BA6NIH7 251 aa12.64□□□□□ -0.39
CLN3-213ENST00000565047 ZSCAN5BA6NJL1 495 aa12.64□□□□□ -0.39
CLN3-213ENST00000565047 PHF1O43189 567 aaPredicted RBP12.64□□□□□ -0.39
CLN3-213ENST00000565047 SLC16A7O60669 478 aa12.64□□□□□ -0.39
CLN3-213ENST00000565047 IGHV1-46P01743 117 aa12.64□□□□□ -0.39
CLN3-213ENST00000565047 ZNF81P51508 661 aa12.64□□□□□ -0.39
CLN3-213ENST00000565047 HMGA2P52926 109 aa12.64□□□□□ -0.39
CLN3-213ENST00000565047 DVL1P1P54792 670 aaPredicted RBP12.64□□□□□ -0.39
CLN3-213ENST00000565047 PPP1CBP62140 327 aa12.64□□□□□ -0.39
CLN3-213ENST00000565047 LSM6P62312 80 aaKnown RBP12.64□□□□□ -0.39
CLN3-213ENST00000565047 GNGT1P63211 74 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms