RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 SIAEQ9HAT2 523 aa8.5□□□□□ -1.05
CLK3-208ENST00000562626 KLHL21Q9UJP4 597 aa8.5□□□□□ -1.05
CLK3-208ENST00000562626 RIIAD1A6NNX1 92 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 ATP6V1G2-DDX39BF2Z307 99 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 ABCD4O14678 606 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 CASKO14936 926 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 CST2P09228 141 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 ZNF3P17036 446 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 MSR1P21757 451 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 HOXC12P31275 282 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 GGT2P36268 569 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 PSG4Q00888 419 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 TEKQ02763 1124 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 HGFACQ04756 655 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 SNAPC1Q16533 368 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 KCNMB1Q16558 191 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 MSMPQ1L6U9 139 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 GSG1Q2KHT4 349 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 PABPC1L2AQ5JQF8 200 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 ZNF774Q6NX45 483 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 CORO6Q6QEF8 472 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 CFAP77Q6ZQR2 320 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 CXXC5Q7LFL8 322 aaKnown RBP8.49□□□□□ -1.05
CLK3-208ENST00000562626 SLC16A14Q7RTX9 510 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 TMEM200AQ86VY9 491 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 PROKR2Q8NFJ6 384 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 OR10S1Q8NGN2 331 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 FNDC8Q8TC99 324 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 SLC7A6Q92536 515 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 OTULINQ96BN8 352 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 ZMYND19Q96E35 227 aaPredicted RBP8.49□□□□□ -1.05
CLK3-208ENST00000562626 SLC38A2Q96QD8 506 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 PITX2Q99697 317 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 OR2H1Q9GZK4 316 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 DCLRE1BQ9H816 532 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 PLEKHF2Q9H8W4 249 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 RNPEPL1Q9HAU8 725 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 OBP2BQ9NPH6 170 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 COMMD3-BMI1R4GMX3 469 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 TANC2Q9HCD6 1990 aa8.49□□□□□ -1.05
CLK3-208ENST00000562626 LOC100509620A0A075B734 347 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 IGHV2OR16-5A0A0B4J2B6 119 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 PRR23D1E9PI22 279 aaPredicted RBP8.48□□□□□ -1.05
CLK3-208ENST00000562626 RER1O15258 196 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 RRP9O43818 475 aaKnown RBP8.48□□□□□ -1.05
CLK3-208ENST00000562626 SELENOFO60613 162 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 UBL3O95164 117 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 FARS2O95363 451 aaKnown RBP8.48□□□□□ -1.05
CLK3-208ENST00000562626 CLIC3O95833 236 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 IFNGP01579 166 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 HMGN1P05114 100 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 PRR23D2P0DMB1 279 aaPredicted RBP8.48□□□□□ -1.05
CLK3-208ENST00000562626 NR2C1P13056 603 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 HOXB1P14653 301 aaPredicted RBP8.48□□□□□ -1.05
CLK3-208ENST00000562626 NPR2P20594 1047 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 APEX1P27695 318 aaKnown RBP8.48□□□□□ -1.05
CLK3-208ENST00000562626 CRABP1P29762 137 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 HIST1H3AP68431 136 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 NAAAQ02083 359 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 HSF2Q03933 536 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 SLC34A1Q06495 639 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 NRN1LQ496H8 165 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 CCDC92Q53HC0 331 aaPredicted RBP8.48□□□□□ -1.05
CLK3-208ENST00000562626 HIST2H3PS2Q5TEC6 136 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 AADACL4Q5VUY2 407 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 SLC18B1Q6NT16 456 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 ZNF704Q6ZNC4 412 aaPredicted RBP8.48□□□□□ -1.05
CLK3-208ENST00000562626 HIST2H3AQ71DI3 136 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 OR6K6Q8NGW6 343 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 OR2T4Q8NH00 348 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 MAP6Q96JE9 813 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 HRASLS5Q96KN8 279 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 AMELYQ99218 206 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 USB1Q9BQ65 265 aaKnown RBP8.48□□□□□ -1.05
CLK3-208ENST00000562626 OR51V1Q9H2C8 321 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 CLEC4MQ9H2X3 399 aaPredicted RBP8.48□□□□□ -1.05
CLK3-208ENST00000562626 PNRC2Q9NPJ4 139 aaKnown RBP8.48□□□□□ -1.05
CLK3-208ENST00000562626 FAM118AQ9NWS6 357 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 DNAJC27Q9NZQ0 273 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 ASH2LQ9UBL3 628 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 NDRG4Q9ULP0 352 aaKnown RBP8.48□□□□□ -1.05
CLK3-208ENST00000562626 MOKQ9UQ07 419 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 KLHDC2Q9Y2U9 406 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 RRP15Q9Y3B9 282 aaKnown RBP8.48□□□□□ -1.05
CLK3-208ENST00000562626 RNF115Q9Y4L5 304 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 YLPM1P49750 1951 aaKnown RBP8.48□□□□□ -1.05
CLK3-208ENST00000562626 USF3Q68DE3 2245 aa8.48□□□□□ -1.05
CLK3-208ENST00000562626 PRRC2AP48634 2157 aaKnown RBP8.47□□□□□ -1.05
CLK3-208ENST00000562626 PRR32B1ATL7 298 aa8.47□□□□□ -1.05
CLK3-208ENST00000562626 E7EQL1 145 aa8.47□□□□□ -1.05
CLK3-208ENST00000562626 SYNGR3O43761 229 aa8.47□□□□□ -1.05
CLK3-208ENST00000562626 TLX2O43763 284 aaPredicted RBP8.47□□□□□ -1.05
CLK3-208ENST00000562626 GLCEO94923 617 aa8.47□□□□□ -1.05
CLK3-208ENST00000562626 ATP6V1G2O95670 118 aa8.47□□□□□ -1.05
CLK3-208ENST00000562626 CD3EP07766 207 aa8.47□□□□□ -1.05
CLK3-208ENST00000562626 DBHP09172 617 aa8.47□□□□□ -1.05
CLK3-208ENST00000562626 ZNF35P13682 527 aa8.47□□□□□ -1.05
CLK3-208ENST00000562626 GABRB1P18505 474 aa8.47□□□□□ -1.05
CLK3-208ENST00000562626 PTAFRP25105 342 aa8.47□□□□□ -1.05
CLK3-208ENST00000562626 GSTT1P30711 240 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms