RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 A0A1W2PR48 441 aa12.03□□□□□ -0.48
CLK3-206ENST00000562078 C7orf77A4D0Y5 90 aa12.03□□□□□ -0.48
CLK3-206ENST00000562078 ACOD1A6NK06 481 aa12.03□□□□□ -0.48
CLK3-206ENST00000562078 PIN1P1O15428 100 aa12.03□□□□□ -0.48
CLK3-206ENST00000562078 AIFM1O95831 613 aa12.03□□□□□ -0.48
CLK3-206ENST00000562078 MBP02144 154 aa12.03□□□□□ -0.48
CLK3-206ENST00000562078 PGAM2P15259 253 aa12.03□□□□□ -0.48
CLK3-206ENST00000562078 FUT1P19526 365 aa12.03□□□□□ -0.48
CLK3-206ENST00000562078 NUTF2P61970 127 aaKnown RBP12.03□□□□□ -0.48
CLK3-206ENST00000562078 MRPS10P82664 201 aaKnown RBP12.03□□□□□ -0.48
CLK3-206ENST00000562078 VWA2Q5GFL6 755 aa12.03□□□□□ -0.48
CLK3-206ENST00000562078 BAP18Q8IXM2 172 aa12.03□□□□□ -0.48
CLK3-206ENST00000562078 PAQR4Q8N4S7 273 aaPredicted RBP12.03□□□□□ -0.48
CLK3-206ENST00000562078 INO80EQ8NBZ0 244 aaPredicted RBP12.03□□□□□ -0.48
CLK3-206ENST00000562078 NUDCD2Q8WVJ2 157 aa12.03□□□□□ -0.48
CLK3-206ENST00000562078 HAVCR1Q96D42 359 aa12.03□□□□□ -0.48
CLK3-206ENST00000562078 FN3KRPQ9HA64 309 aa12.03□□□□□ -0.48
CLK3-206ENST00000562078 ZCCHC3Q9NUD5 404 aaKnown RBP12.03□□□□□ -0.48
CLK3-206ENST00000562078 PARPBPQ9NWS1 579 aa12.03□□□□□ -0.48
CLK3-206ENST00000562078 TRPC4Q9UBN4 977 aa12.03□□□□□ -0.48
CLK3-206ENST00000562078 APOBEC3BQ9UH17 382 aaKnown RBP12.03□□□□□ -0.48
CLK3-206ENST00000562078 SHPKQ9UHJ6 478 aa12.03□□□□□ -0.48
CLK3-206ENST00000562078 A0A1W2PS29 197 aa12.03□□□□□ -0.48
CLK3-206ENST00000562078 PRSS47A8MTI9 375 aa12.03□□□□□ -0.48
CLK3-206ENST00000562078 BRINP1O60477 761 aa12.03□□□□□ -0.48
CLK3-206ENST00000562078 ZGLP1P0C6A0 271 aa12.03□□□□□ -0.48
CLK3-206ENST00000562078 TPT1P13693 172 aaKnown RBP12.03□□□□□ -0.48
CLK3-206ENST00000562078 GTF2F2P13984 249 aa12.03□□□□□ -0.48
CLK3-206ENST00000562078 ITPKBP27987 946 aa12.03□□□□□ -0.48
CLK3-206ENST00000562078 CD1CP29017 333 aa12.03□□□□□ -0.48
CLK3-206ENST00000562078 AQP2P41181 271 aa12.03□□□□□ -0.48
CLK3-206ENST00000562078 NDUFA6P56556 154 aa12.03□□□□□ -0.48
CLK3-206ENST00000562078 KIAA0141Q14154 515 aaPredicted RBP12.03□□□□□ -0.48
CLK3-206ENST00000562078 TCEAL6Q6IPX3 200 aa12.03□□□□□ -0.48
CLK3-206ENST00000562078 KDF1Q8NAX2 398 aaPredicted RBP12.03□□□□□ -0.48
CLK3-206ENST00000562078 MFSD9Q8NBP5 474 aa12.03□□□□□ -0.48
CLK3-206ENST00000562078 OR1J2Q8NGS2 313 aa12.03□□□□□ -0.48
CLK3-206ENST00000562078 RBM18Q96H35 190 aaKnown RBP12.03□□□□□ -0.48
CLK3-206ENST00000562078 SULT4A1Q9BR01 284 aa12.03□□□□□ -0.48
CLK3-206ENST00000562078 SRMSQ9H3Y6 488 aa12.03□□□□□ -0.48
CLK3-206ENST00000562078 LAMP5Q9UJQ1 280 aa12.03□□□□□ -0.48
CLK3-206ENST00000562078 GPR55Q9Y2T6 319 aaPredicted RBP12.03□□□□□ -0.48
CLK3-206ENST00000562078 TSTD3H0UI37 97 aa12.02□□□□□ -0.48
CLK3-206ENST00000562078 H7C417 338 aa12.02□□□□□ -0.48
CLK3-206ENST00000562078 CD3DP04234 171 aa12.02□□□□□ -0.48
CLK3-206ENST00000562078 C8orf89P0DMQ9 161 aa12.02□□□□□ -0.48
CLK3-206ENST00000562078 PRKAG1P54619 331 aa12.02□□□□□ -0.48
CLK3-206ENST00000562078 DUSP2Q05923 314 aa12.02□□□□□ -0.48
CLK3-206ENST00000562078 KCNAB1Q14722 419 aa12.02□□□□□ -0.48
CLK3-206ENST00000562078 ACTBL2Q562R1 376 aa12.02□□□□□ -0.48
CLK3-206ENST00000562078 MRM1Q6IN84 353 aaKnown RBP12.02□□□□□ -0.48
CLK3-206ENST00000562078 SLC30A7Q8NEW0 376 aa12.02□□□□□ -0.48
CLK3-206ENST00000562078 ZNF559Q9BR84 538 aa12.02□□□□□ -0.48
CLK3-206ENST00000562078 C6orf106Q9H6K1 298 aaPredicted RBP12.02□□□□□ -0.48
CLK3-206ENST00000562078 LPAR3Q9UBY5 353 aa12.02□□□□□ -0.48
CLK3-206ENST00000562078 MTFP1Q9UDX5 166 aa12.02□□□□□ -0.48
CLK3-206ENST00000562078 SLC35A3Q9Y2D2 325 aa12.02□□□□□ -0.48
CLK3-206ENST00000562078 TIMM10BQ9Y5J6 103 aa12.02□□□□□ -0.48
CLK3-206ENST00000562078 BCAT2O15382 392 aaPredicted RBP12.02□□□□□ -0.49
CLK3-206ENST00000562078 MED6O75586 246 aa12.02□□□□□ -0.49
CLK3-206ENST00000562078 PMS2P2O95744 297 aa12.02□□□□□ -0.49
CLK3-206ENST00000562078 CD14P08571 375 aa12.02□□□□□ -0.49
CLK3-206ENST00000562078 LIPCP11150 499 aa12.02□□□□□ -0.49
CLK3-206ENST00000562078 NDUFS1P28331 727 aa12.02□□□□□ -0.49
CLK3-206ENST00000562078 MLC1Q15049 377 aa12.02□□□□□ -0.49
CLK3-206ENST00000562078 ALG11Q2TAA5 492 aa12.02□□□□□ -0.49
CLK3-206ENST00000562078 PDZD11Q5EBL8 140 aa12.02□□□□□ -0.49
CLK3-206ENST00000562078 PAPD4Q6PIY7 484 aaKnown RBP12.02□□□□□ -0.49
CLK3-206ENST00000562078 AVL9Q8NBF6 648 aa12.02□□□□□ -0.49
CLK3-206ENST00000562078 OR4K14Q8NGD5 310 aa12.02□□□□□ -0.49
CLK3-206ENST00000562078 SECTM1Q8WVN6 248 aa12.02□□□□□ -0.49
CLK3-206ENST00000562078 RLN3Q8WXF3 142 aa12.02□□□□□ -0.49
CLK3-206ENST00000562078 SMIM19Q96E16 107 aa12.02□□□□□ -0.49
CLK3-206ENST00000562078 CNRIP1Q96F85 164 aaPredicted RBP12.02□□□□□ -0.49
CLK3-206ENST00000562078 MICU1Q9BPX6 476 aa12.02□□□□□ -0.49
CLK3-206ENST00000562078 GPR174Q9BXC1 333 aa12.02□□□□□ -0.49
CLK3-206ENST00000562078 SEMA6CQ9H3T2 930 aa12.02□□□□□ -0.49
CLK3-206ENST00000562078 C1orf198Q9H425 327 aa12.02□□□□□ -0.49
CLK3-206ENST00000562078 ADGRL4Q9HBW9 690 aa12.02□□□□□ -0.49
CLK3-206ENST00000562078 WSB2Q9NYS7 404 aaPredicted RBP12.02□□□□□ -0.49
CLK3-206ENST00000562078 P2RX2Q9UBL9 471 aa12.02□□□□□ -0.49
CLK3-206ENST00000562078 FAM157AC9JC47 383 aa12.01□□□□□ -0.49
CLK3-206ENST00000562078 F8VVB4 439 aa12.01□□□□□ -0.49
CLK3-206ENST00000562078 F8VWA3 439 aa12.01□□□□□ -0.49
CLK3-206ENST00000562078 CTNSO60931 367 aa12.01□□□□□ -0.49
CLK3-206ENST00000562078 APBB3O95704 486 aa12.01□□□□□ -0.49
CLK3-206ENST00000562078 IFNA10P01566 189 aa12.01□□□□□ -0.49
CLK3-206ENST00000562078 GYPBP06028 91 aa12.01□□□□□ -0.49
CLK3-206ENST00000562078 CD5P06127 495 aa12.01□□□□□ -0.49
CLK3-206ENST00000562078 SBK2P0C263 348 aa12.01□□□□□ -0.49
CLK3-206ENST00000562078 AKT2P31751 481 aa12.01□□□□□ -0.49
CLK3-206ENST00000562078 SNRPNP63162 240 aaKnown RBP12.01□□□□□ -0.49
CLK3-206ENST00000562078 LBHQ53QV2 105 aaPredicted RBP12.01□□□□□ -0.49
CLK3-206ENST00000562078 VN1R4Q7Z5H5 301 aa12.01□□□□□ -0.49
CLK3-206ENST00000562078 UBALD2Q8IYN6 164 aa12.01□□□□□ -0.49
CLK3-206ENST00000562078 OR10G6Q8NH81 332 aa12.01□□□□□ -0.49
CLK3-206ENST00000562078 SUN3Q8TAQ9 357 aa12.01□□□□□ -0.49
CLK3-206ENST00000562078 TMEM255BQ8WV15 326 aa12.01□□□□□ -0.49
CLK3-206ENST00000562078 NOP16Q9Y3C1 178 aaKnown RBP12.01□□□□□ -0.49
CLK3-206ENST00000562078 A0A1W2PPE2 198 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms