RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 SLC25A36Q96CQ1 311 aa12.59□□□□□ -0.39
VPS9D1-202ENST00000561976 SLC25A44Q96H78 314 aaPredicted RBP12.59□□□□□ -0.39
VPS9D1-202ENST00000561976 SLC6A7Q99884 636 aa12.59□□□□□ -0.39
VPS9D1-202ENST00000561976 SCPEP1Q9HB40 452 aa12.59□□□□□ -0.39
VPS9D1-202ENST00000561976 ASF1BQ9NVP2 202 aa12.59□□□□□ -0.39
VPS9D1-202ENST00000561976 ZNF175Q9Y473 711 aa12.59□□□□□ -0.39
VPS9D1-202ENST00000561976 FANCMQ8IYD8 2048 aa12.59□□□□□ -0.39
VPS9D1-202ENST00000561976 FITM1A5D6W6 292 aa12.59□□□□□ -0.39
VPS9D1-202ENST00000561976 TMEM235A6NFC5 223 aa12.59□□□□□ -0.39
VPS9D1-202ENST00000561976 OR2AT4A6NND4 320 aa12.59□□□□□ -0.39
VPS9D1-202ENST00000561976 H7C2Y5 167 aa12.59□□□□□ -0.39
VPS9D1-202ENST00000561976 ABCD4O14678 606 aa12.59□□□□□ -0.39
VPS9D1-202ENST00000561976 PPIAP62937 165 aaKnown RBP12.59□□□□□ -0.39
VPS9D1-202ENST00000561976 UBE2IP63279 158 aaKnown RBP12.59□□□□□ -0.39
VPS9D1-202ENST00000561976 PMPCAQ10713 525 aa12.59□□□□□ -0.39
VPS9D1-202ENST00000561976 CDNFQ49AH0 187 aa12.59□□□□□ -0.39
VPS9D1-202ENST00000561976 CCDC157Q569K6 752 aa12.59□□□□□ -0.39
VPS9D1-202ENST00000561976 PAN3Q58A45 887 aaKnown RBP12.59□□□□□ -0.39
VPS9D1-202ENST00000561976 ZNF542PQ5EBM4 170 aa12.59□□□□□ -0.39
VPS9D1-202ENST00000561976 PABPC1L2AQ5JQF8 200 aa12.59□□□□□ -0.39
VPS9D1-202ENST00000561976 FAM166AQ6J272 317 aa12.59□□□□□ -0.39
VPS9D1-202ENST00000561976 KLHDC3Q9BQ90 382 aa12.59□□□□□ -0.39
VPS9D1-202ENST00000561976 PIGMQ9H3S5 423 aa12.59□□□□□ -0.39
VPS9D1-202ENST00000561976 PURGQ9UJV8 347 aaKnown RBP12.59□□□□□ -0.39
VPS9D1-202ENST00000561976 MRPS18BQ9Y676 258 aaKnown RBP12.59□□□□□ -0.39
VPS9D1-202ENST00000561976 ARID1BQ8NFD5 2236 aaPredicted RBP12.59□□□□□ -0.39
VPS9D1-202ENST00000561976 CACNA1IQ9P0X4 2223 aa12.59□□□□□ -0.39
VPS9D1-202ENST00000561976 SLC16A7O60669 478 aa12.58□□□□□ -0.39
VPS9D1-202ENST00000561976 SLC25A12O75746 678 aa12.58□□□□□ -0.39
VPS9D1-202ENST00000561976 DCNP07585 359 aaKnown RBP12.58□□□□□ -0.39
VPS9D1-202ENST00000561976 ZNF735P0CB33 412 aa12.58□□□□□ -0.39
VPS9D1-202ENST00000561976 SLC25A4P12235 298 aa12.58□□□□□ -0.39
VPS9D1-202ENST00000561976 HNRNPA2B1P22626 353 aaKnown RBP12.58□□□□□ -0.39
VPS9D1-202ENST00000561976 DNASE1L1P49184 302 aa12.58□□□□□ -0.39
VPS9D1-202ENST00000561976 AKR1D1P51857 326 aa12.58□□□□□ -0.39
VPS9D1-202ENST00000561976 CXADRP78310 365 aa12.58□□□□□ -0.39
VPS9D1-202ENST00000561976 CTAG1AP78358 180 aa12.58□□□□□ -0.39
VPS9D1-202ENST00000561976 MFGE8Q08431 387 aaPredicted RBP12.58□□□□□ -0.39
VPS9D1-202ENST00000561976 SPOCK1Q08629 439 aa12.58□□□□□ -0.39
VPS9D1-202ENST00000561976 SQSTM1Q13501 440 aa12.58□□□□□ -0.39
VPS9D1-202ENST00000561976 TOMM20Q15388 145 aa12.58□□□□□ -0.39
VPS9D1-202ENST00000561976 FDX2Q6P4F2 183 aa12.58□□□□□ -0.39
VPS9D1-202ENST00000561976 UNQ6126/PRO20091Q6UXV3 157 aa12.58□□□□□ -0.39
VPS9D1-202ENST00000561976 INO80EQ8NBZ0 244 aaPredicted RBP12.58□□□□□ -0.39
VPS9D1-202ENST00000561976 OR1S2Q8NGQ3 325 aa12.58□□□□□ -0.39
VPS9D1-202ENST00000561976 THAP6Q8TBB0 222 aa12.58□□□□□ -0.39
VPS9D1-202ENST00000561976 RNF128Q8TEB7 428 aa12.58□□□□□ -0.39
VPS9D1-202ENST00000561976 SLC37A2Q8TED4 501 aa12.58□□□□□ -0.39
VPS9D1-202ENST00000561976 ASB5Q8WWX0 329 aa12.58□□□□□ -0.39
VPS9D1-202ENST00000561976 ASB17Q8WXJ9 295 aa12.58□□□□□ -0.39
VPS9D1-202ENST00000561976 FAM131CQ96AQ9 280 aa12.58□□□□□ -0.39
VPS9D1-202ENST00000561976 ZNF587Q96SQ5 575 aaPredicted RBP12.58□□□□□ -0.39
VPS9D1-202ENST00000561976 SLCO5A1Q9H2Y9 848 aa12.58□□□□□ -0.39
VPS9D1-202ENST00000561976 GAREM1Q9H706 876 aa12.58□□□□□ -0.39
VPS9D1-202ENST00000561976 PCDHB10Q9UN67 800 aa12.58□□□□□ -0.39
VPS9D1-202ENST00000561976 B9D1Q9UPM9 204 aa12.58□□□□□ -0.39
VPS9D1-202ENST00000561976 RNF222A6NCQ9 220 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 SIGLEC6O43699 453 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 ATG12O94817 140 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 CXCR1P25024 350 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 PRKXP51817 358 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 RIDAP52758 137 aaKnown RBP12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 FUT7Q11130 342 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 MOGAT2Q3SYC2 334 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 RAB12Q6IQ22 244 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 TMEM88Q6PEY1 159 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 PAPD4Q6PIY7 484 aaKnown RBP12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 MDGA2Q7Z553 956 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 ADGRE4PQ86SQ3 457 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 ACBD4Q8NC06 268 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 OR51A2Q8NGJ7 313 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 OR13C8Q8NGS7 320 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 CASTOR1Q8WTX7 329 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 PHYHIPLQ96FC7 376 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 PRODH2Q9UF12 536 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 MLXQ9UH92 298 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 C2orf16Q68DN1 1984 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 A0A1W2PPC1 479 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 TMEM200CA6NKL6 621 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 GPR31O00270 319 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 TNFRSF10CO14798 259 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 UTS2O95399 124 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 NUDT14O95848 222 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 RNASE10Q5GAN6 216 aaKnown RBP12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 C1QL3Q5VWW1 255 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 KCTD18Q6PI47 426 aaPredicted RBP12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 RHOUQ7L0Q8 258 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 KCTD9Q7L273 389 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 ZNF615Q8N8J6 731 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 HERVK_113Q902F9 699 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 BADQ92934 168 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 TCEAL2Q9H3H9 227 aaPredicted RBP12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 MYOZ1Q9NP98 299 aaPredicted RBP12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 KLK13Q9UKR3 277 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 VSIG4Q9Y279 399 aa12.58□□□□□ -0.4
VPS9D1-202ENST00000561976 FAM221BA6H8Z2 402 aa12.57□□□□□ -0.4
VPS9D1-202ENST00000561976 KLF8O95600 359 aaPredicted RBP12.57□□□□□ -0.4
VPS9D1-202ENST00000561976 VAMP1P23763 118 aa12.57□□□□□ -0.4
VPS9D1-202ENST00000561976 BDKRB2P30411 391 aa12.57□□□□□ -0.4
VPS9D1-202ENST00000561976 CASRP41180 1078 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms