RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 BCAP31P51572 246 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 ZNF136P52737 540 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 ZNF138P52744 262 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 ADARB1P78563 741 aaKnown RBP1.09□□□□□ -2.23
USP3-209ENST00000558925 SPAG1Q07617 926 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 TWF1Q12792 350 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 SMARCB1Q12824 385 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 CLINT1Q14677 625 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 TRAM2Q15035 370 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 SF3A2Q15428 464 aaKnown RBP1.09□□□□□ -2.23
USP3-209ENST00000558925 OR7A5Q15622 319 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 TSC22D1Q15714 1073 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 TMEM183BQ1AE95 376 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 TTLL9Q3SXZ7 439 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 CAVIN4Q5BKX8 364 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 GPR107Q5VW38 600 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 PLCXD3Q63HM9 321 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 CEMP1Q6PRD7 247 aaPredicted RBP1.09□□□□□ -2.23
USP3-209ENST00000558925 ZNF493Q6ZR52 646 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 OTUD6AQ7L8S5 288 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 STRADAQ7RTN6 431 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 CMC1Q7Z7K0 106 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 CBLN2Q8IUK8 224 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 TMEM183AQ8IXX5 376 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 MREGQ8N565 214 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 TRAM1L1Q8N609 369 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 PROKR2Q8NFJ6 384 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 OR10AD1Q8NGE0 317 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 OR10G9Q8NGN4 311 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 OR5K2Q8NHB8 316 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 ACTRT1Q8TDG2 376 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 GPX8Q8TED1 209 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 CA5BP1Q8WTZ4 195 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 LRRC29Q8WV35 223 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 WFIKKN1Q96NZ8 548 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 ZNF317Q96PQ6 595 aaPredicted RBP1.09□□□□□ -2.23
USP3-209ENST00000558925 NRTNQ99748 197 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 MRPL37Q9BZE1 423 aaKnown RBP1.09□□□□□ -2.23
USP3-209ENST00000558925 TMEM38AQ9H6F2 299 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 NANOGQ9H9S0 305 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 DMAP1Q9NPF5 467 aaPredicted RBP1.09□□□□□ -2.23
USP3-209ENST00000558925 ZDHHC4Q9NPG8 344 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 TMEM9BQ9NQ34 198 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 PRSS16Q9NQE7 514 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 ZNF226Q9NYT6 803 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 CCDC59Q9P031 241 aaKnown RBP1.09□□□□□ -2.23
USP3-209ENST00000558925 RPS6KB2Q9UBS0 482 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 CLN8Q9UBY8 286 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 ZMAT5Q9UDW3 170 aaKnown RBP1.09□□□□□ -2.23
USP3-209ENST00000558925 PCYOX1Q9UHG3 505 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 SHPKQ9UHJ6 478 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 LGALS13Q9UHV8 139 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 CELA1Q9UNI1 258 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 PSG8Q9UQ74 426 aa1.09□□□□□ -2.23
USP3-209ENST00000558925 RCL1Q9Y2P8 373 aaKnown RBP1.09□□□□□ -2.23
USP3-209ENST00000558925 ARHGAP23Q9P227 1491 aa1.09□□□□□ -2.24
USP3-209ENST00000558925 ANKRD12Q6UB98 2062 aa1.09□□□□□ -2.24
USP3-209ENST00000558925 DOCK9Q9BZ29 2069 aa1.09□□□□□ -2.24
USP3-209ENST00000558925 MYO10Q9HD67 2058 aa1.09□□□□□ -2.24
USP3-209ENST00000558925 C2orf16Q68DN1 1984 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 ATRXP46100 2492 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 KCNE1BA0A087WTH5 132 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 IGHV3-64DA0A0J9YX35 117 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 LOC100653049A0A140TA62 436 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 FAM166BA8MTA8 275 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 ZNF99A8MXY4 864 aaPredicted RBP1.08□□□□□ -2.24
USP3-209ENST00000558925 KLLNB2CW77 178 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 H3BNH8 94 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 H7C417 338 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 M0R3G1 203 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 PEX7O00628 323 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 PLPP1O14494 284 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 BCKDKO14874 412 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 RAD51CO43502 376 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 SS18L1O75177 396 aaPredicted RBP1.08□□□□□ -2.24
USP3-209ENST00000558925 RDH16O75452 317 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 CA11O75493 328 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 KRT34O76011 436 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 BGLAPP02818 100 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 PCCAP05165 728 aaPredicted RBP1.08□□□□□ -2.24
USP3-209ENST00000558925 KRT16P08779 473 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 CLTAP09496 248 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 TLX1NBP0CAT3 122 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 DNAH10OSP0CZ25 163 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 PRPS2P11908 318 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 HPGDP15428 266 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 GABRG2P18507 467 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 SRMP19623 302 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 CD82P27701 267 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 FOXN2P32314 431 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 CEACAM3P40198 252 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 PEX19P40855 299 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 RFC3P40938 356 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 NMUP48645 174 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 RAB7AP51149 207 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 CARD18P57730 90 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 ATP6V0D1P61421 351 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 STXBP1P61764 594 aaKnown RBP1.08□□□□□ -2.24
USP3-209ENST00000558925 RAB11AP62491 216 aa1.08□□□□□ -2.24
USP3-209ENST00000558925 RAD51Q06609 339 aa1.08□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms