RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 CDC40O60508 579 aaKnown RBP eCLIP11.12□□□□□ -0.63
LDLR-205ENST00000557933 ACTL6AO96019 429 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 TACSTD2P09758 323 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 CALCBP10092 127 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 TSFMP43897 325 aaKnown RBP11.12□□□□□ -0.63
LDLR-205ENST00000557933 ID4P47928 161 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 FMODQ06828 376 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 IKZF1Q13422 519 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 ZNF74Q16587 644 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 SLC16A9Q7RTY1 509 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 YAF2Q8IY57 180 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 OR2I1PQ8NGU4 316 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 VSTM2LQ96N03 204 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 C12orf57Q99622 126 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 Q9N2J8 555 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 VSIG4Q9Y279 399 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 EMC9Q9Y3B6 208 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 RNF222A6NCQ9 220 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 OR6A2O95222 327 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 CYB5AP00167 134 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 CSF1P09603 554 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 PGAM2P15259 253 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 C5AR1P21730 350 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 GPR143P51810 404 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 DMWDQ09019 674 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 BIKQ13323 160 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 GFOD2Q3B7J2 385 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 JMJD6Q6NYC1 403 aaPredicted RBP11.12□□□□□ -0.63
LDLR-205ENST00000557933 HAGHLQ6PII5 290 aaPredicted RBP11.12□□□□□ -0.63
LDLR-205ENST00000557933 PARM1Q6UWI2 310 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 LDLRAD3Q86YD5 345 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 SAMD14Q8IZD0 417 aaPredicted RBP11.12□□□□□ -0.63
LDLR-205ENST00000557933 MAFIPQ8WZ33 124 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 CTHRC1Q96CG8 243 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 SLC25A44Q96H78 314 aaPredicted RBP11.12□□□□□ -0.63
LDLR-205ENST00000557933 BMFQ96LC9 184 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 INTS14Q96SY0 518 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 MESP1Q9BRJ9 268 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 S1PR5Q9H228 398 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 MMP25Q9NPA2 562 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.12□□□□□ -0.63
LDLR-205ENST00000557933 CENPMQ9NSP4 180 aa11.12□□□□□ -0.63
LDLR-205ENST00000557933 MED19A0JLT2 244 aaPredicted RBP11.11□□□□□ -0.63
LDLR-205ENST00000557933 OR6C65A6NJZ3 312 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 RFPL4AA6NLU0 287 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 HMSDA8MTL9 139 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 B4DGG1 531 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 RFPL4AL1F8VTS6 287 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 HLA-DOBP13765 273 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 ALOX5APP20292 161 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 IL11P20809 199 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 CNR1P21554 472 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 ADAM8P78325 824 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 KLHL26Q53HC5 615 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 SHISA6Q6ZSJ9 500 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 FAM122BQ7Z309 247 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 HSD17B13Q7Z5P4 300 aaPredicted RBP11.11□□□□□ -0.63
LDLR-205ENST00000557933 DEFB119Q8N690 84 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 NT5CQ8TCD5 201 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 ELP5Q8TE02 316 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 MMABQ96EY8 250 aaPredicted RBP11.11□□□□□ -0.63
LDLR-205ENST00000557933 C4orf45Q96LM5 186 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 TMPRSS13Q9BYE2 586 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 ESRP2Q9H6T0 727 aaKnown RBP11.11□□□□□ -0.63
LDLR-205ENST00000557933 TREM1Q9NP99 234 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 SLC22A11Q9NSA0 550 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 COMMD9Q9P000 198 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 ZNF736B4DX44 427 aaPredicted RBP11.11□□□□□ -0.63
LDLR-205ENST00000557933 ZNF10P21506 573 aaPredicted RBP11.11□□□□□ -0.63
LDLR-205ENST00000557933 GNALP38405 381 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 NPBWR1P48145 328 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 PSMD4P55036 377 aaKnown RBP11.11□□□□□ -0.63
LDLR-205ENST00000557933 SHEQ5VZ18 495 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 LINC00114Q6XXX2 140 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 OR13C8Q8NGS7 320 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 OR6K3Q8NGY3 331 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 SLC37A2Q8TED4 501 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 TLNRD1Q9H1K6 362 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 OR10A5Q9H207 317 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 HRH4Q9H3N8 390 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 RASL12Q9NYN1 266 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 EMC3Q9P0I2 261 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 EPHA6Q9UF33 1036 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 CYB5R1Q9UHQ9 305 aa11.11□□□□□ -0.63
LDLR-205ENST00000557933 A0A087WV62 115 aa11.1□□□□□ -0.63
LDLR-205ENST00000557933 A0A1B0GV50 99 aa11.1□□□□□ -0.63
LDLR-205ENST00000557933 F8W036 122 aa11.1□□□□□ -0.63
LDLR-205ENST00000557933 ZNF749O43361 778 aa11.1□□□□□ -0.63
LDLR-205ENST00000557933 SLC2A1P11166 492 aa11.1□□□□□ -0.63
LDLR-205ENST00000557933 CTLA4P16410 223 aa11.1□□□□□ -0.63
LDLR-205ENST00000557933 GNB3P16520 340 aa11.1□□□□□ -0.63
LDLR-205ENST00000557933 SDHAP31040 664 aa11.1□□□□□ -0.63
LDLR-205ENST00000557933 BLOC1S1P78537 153 aa11.1□□□□□ -0.63
LDLR-205ENST00000557933 ILF3Q12906 894 aaKnown RBP eCLIP11.1□□□□□ -0.638e-8■■■□□ 17.5
LDLR-205ENST00000557933 RSPO4Q2I0M5 234 aaPredicted RBP11.1□□□□□ -0.63
LDLR-205ENST00000557933 ZNF776Q68DI1 518 aaPredicted RBP11.1□□□□□ -0.63
LDLR-205ENST00000557933 ZNF550Q7Z398 422 aa11.1□□□□□ -0.63
LDLR-205ENST00000557933 CDC20BQ86Y33 519 aa11.1□□□□□ -0.63
LDLR-205ENST00000557933 ARMC10Q8N2F6 343 aa11.1□□□□□ -0.63
LDLR-205ENST00000557933 OR4D6Q8NGJ1 314 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms