RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 GDPGP1Q6ZNW5 385 aa10.97□□□□□ -0.65
SHMT2-230ENST00000557427 NUFIP2Q7Z417 695 aaKnown RBP10.97□□□□□ -0.65
SHMT2-230ENST00000557427 WFDC8Q8IUA0 241 aa10.97□□□□□ -0.65
SHMT2-230ENST00000557427 CADM2Q8N3J6 435 aa10.97□□□□□ -0.65
SHMT2-230ENST00000557427 KBTBD8Q8NFY9 601 aa10.97□□□□□ -0.65
SHMT2-230ENST00000557427 OR13C2Q8NGS9 318 aa10.97□□□□□ -0.65
SHMT2-230ENST00000557427 OR6K3Q8NGY3 331 aa10.97□□□□□ -0.65
SHMT2-230ENST00000557427 BORCS5Q969J3 196 aa10.97□□□□□ -0.65
SHMT2-230ENST00000557427 CPNE4Q96A23 557 aaPredicted RBP10.97□□□□□ -0.65
SHMT2-230ENST00000557427 DCSTAMPQ9H295 470 aa10.97□□□□□ -0.65
SHMT2-230ENST00000557427 PALMDQ9NP74 551 aa10.97□□□□□ -0.65
SHMT2-230ENST00000557427 CHCHD3Q9NX63 227 aaKnown RBP10.97□□□□□ -0.65
SHMT2-230ENST00000557427 H2AFY2Q9P0M6 372 aaPredicted RBP10.97□□□□□ -0.65
SHMT2-230ENST00000557427 GPR52Q9Y2T5 361 aa10.97□□□□□ -0.65
SHMT2-230ENST00000557427 A3GALT2U3KPV4 340 aa10.97□□□□□ -0.65
SHMT2-230ENST00000557427 TRRAPQ9Y4A5 3859 aa10.97□□□□□ -0.65
SHMT2-230ENST00000557427 SULT2B1O00204 365 aa10.96□□□□□ -0.65
SHMT2-230ENST00000557427 ETV2O00321 342 aaPredicted RBP10.96□□□□□ -0.65
SHMT2-230ENST00000557427 KPNA4O00629 521 aaPredicted RBP10.96□□□□□ -0.65
SHMT2-230ENST00000557427 CH25HO95992 272 aa10.96□□□□□ -0.65
SHMT2-230ENST00000557427 YES1P07947 543 aa10.96□□□□□ -0.65
SHMT2-230ENST00000557427 HSMCR30P0CW71 290 aa10.96□□□□□ -0.65
SHMT2-230ENST00000557427 SAGP10523 405 aaPredicted RBP10.96□□□□□ -0.65
SHMT2-230ENST00000557427 PNMTP11086 282 aa10.96□□□□□ -0.65
SHMT2-230ENST00000557427 SLC6A6P31641 620 aa10.96□□□□□ -0.65
SHMT2-230ENST00000557427 APOBEC1P41238 236 aaKnown RBP10.96□□□□□ -0.65
SHMT2-230ENST00000557427 ETV1P50549 477 aa10.96□□□□□ -0.65
SHMT2-230ENST00000557427 WNT4P56705 351 aa10.96□□□□□ -0.65
SHMT2-230ENST00000557427 RAC3P60763 192 aa10.96□□□□□ -0.65
SHMT2-230ENST00000557427 RNPS1Q15287 305 aaKnown RBP10.96□□□□□ -0.65
SHMT2-230ENST00000557427 SSX1Q16384 188 aa10.96□□□□□ -0.65
SHMT2-230ENST00000557427 WBP2NLQ6ICG8 309 aa10.96□□□□□ -0.65
SHMT2-230ENST00000557427 ALKBH2Q6NS38 261 aa10.96□□□□□ -0.65
SHMT2-230ENST00000557427 TMPPEQ6ZT21 453 aa10.96□□□□□ -0.65
SHMT2-230ENST00000557427 ADCK1Q86TW2 530 aa10.96□□□□□ -0.65
SHMT2-230ENST00000557427 ADGRG3Q86Y34 549 aa10.96□□□□□ -0.65
SHMT2-230ENST00000557427 OR9Q1Q8NGQ5 310 aa10.96□□□□□ -0.65
SHMT2-230ENST00000557427 S100ZQ8WXG8 99 aa10.96□□□□□ -0.65
SHMT2-230ENST00000557427 FBXW5Q969U6 566 aa10.96□□□□□ -0.65
SHMT2-230ENST00000557427 SGTBQ96EQ0 304 aa10.96□□□□□ -0.65
SHMT2-230ENST00000557427 TMEM43Q9BTV4 400 aa10.96□□□□□ -0.65
SHMT2-230ENST00000557427 C12orf10Q9HB07 376 aa10.96□□□□□ -0.65
SHMT2-230ENST00000557427 HINT3Q9NQE9 182 aaKnown RBP10.96□□□□□ -0.65
SHMT2-230ENST00000557427 CMC2Q9NRP2 79 aa10.96□□□□□ -0.65
SHMT2-230ENST00000557427 SEC14L4Q9UDX3 406 aa10.96□□□□□ -0.65
SHMT2-230ENST00000557427 CLEC2DQ9UHP7 191 aa10.96□□□□□ -0.65
SHMT2-230ENST00000557427 ELOA3DA6NLF2 546 aaPredicted RBP10.95□□□□□ -0.66
SHMT2-230ENST00000557427 IGHA1P01876 353 aa10.95□□□□□ -0.66
SHMT2-230ENST00000557427 PPP3CBP16298 524 aa10.95□□□□□ -0.66
SHMT2-230ENST00000557427 CPEP16870 476 aa10.95□□□□□ -0.66
SHMT2-230ENST00000557427 FUT1P19526 365 aa10.95□□□□□ -0.66
SHMT2-230ENST00000557427 PTNP21246 168 aa10.95□□□□□ -0.66
SHMT2-230ENST00000557427 AGTR1P30556 359 aa10.95□□□□□ -0.66
SHMT2-230ENST00000557427 DIO1P49895 249 aa10.95□□□□□ -0.66
SHMT2-230ENST00000557427 BMXP51813 675 aa10.95□□□□□ -0.66
SHMT2-230ENST00000557427 RASGEF1BQ0VAM2 473 aa10.95□□□□□ -0.66
SHMT2-230ENST00000557427 FHL1Q13642 323 aa10.95□□□□□ -0.66
SHMT2-230ENST00000557427 ZNF846Q147U1 533 aa10.95□□□□□ -0.66
SHMT2-230ENST00000557427 ELOA3BQ3SY89 546 aa10.95□□□□□ -0.66
SHMT2-230ENST00000557427 C3orf33Q6P1S2 294 aa10.95□□□□□ -0.66
SHMT2-230ENST00000557427 NIPAL3Q6P499 406 aa10.95□□□□□ -0.66
SHMT2-230ENST00000557427 BEND4Q6ZU67 534 aa10.95□□□□□ -0.66
SHMT2-230ENST00000557427 GRINAQ7Z429 371 aa10.95□□□□□ -0.66
SHMT2-230ENST00000557427 ATG4DQ86TL0 474 aaPredicted RBP10.95□□□□□ -0.66
SHMT2-230ENST00000557427 OAFQ86UD1 273 aa10.95□□□□□ -0.66
SHMT2-230ENST00000557427 CPOQ8IVL8 374 aa10.95□□□□□ -0.66
SHMT2-230ENST00000557427 ELOA3Q8NG57 546 aa10.95□□□□□ -0.66
SHMT2-230ENST00000557427 SGMS2Q8NHU3 365 aa10.95□□□□□ -0.66
SHMT2-230ENST00000557427 RNF128Q8TEB7 428 aa10.95□□□□□ -0.66
SHMT2-230ENST00000557427 C3orf49Q96BT1 292 aa10.95□□□□□ -0.66
SHMT2-230ENST00000557427 TRAF4Q9BUZ4 470 aaPredicted RBP10.95□□□□□ -0.66
SHMT2-230ENST00000557427 IFT27Q9BW83 186 aa10.95□□□□□ -0.66
SHMT2-230ENST00000557427 OR11A1Q9GZK7 315 aa10.95□□□□□ -0.66
SHMT2-230ENST00000557427 SLIRPQ9GZT3 109 aaKnown RBP10.95□□□□□ -0.66
SHMT2-230ENST00000557427 OR51E2Q9H255 320 aa10.95□□□□□ -0.66
SHMT2-230ENST00000557427 SIAEQ9HAT2 523 aa10.95□□□□□ -0.66
SHMT2-230ENST00000557427 NDUFB11Q9NX14 153 aa10.95□□□□□ -0.66
SHMT2-230ENST00000557427 CCDC59Q9P031 241 aaKnown RBP10.95□□□□□ -0.66
SHMT2-230ENST00000557427 SPIN1Q9Y657 262 aaPredicted RBP10.95□□□□□ -0.66
SHMT2-230ENST00000557427 PMF1-BGLAPU3KQ54 211 aa10.95□□□□□ -0.66
SHMT2-230ENST00000557427 TRAV27A0A087WT01 109 aa10.94□□□□□ -0.66
SHMT2-230ENST00000557427 TMED7-TICAM2A0A0A6YYA0 188 aa10.94□□□□□ -0.66
SHMT2-230ENST00000557427 A0A0G2JK05 382 aa10.94□□□□□ -0.66
SHMT2-230ENST00000557427 METTL15A6NJ78 407 aa10.94□□□□□ -0.66
SHMT2-230ENST00000557427 CLDN25C9JDP6 229 aa10.94□□□□□ -0.66
SHMT2-230ENST00000557427 NDUFB2O95178 105 aa10.94□□□□□ -0.66
SHMT2-230ENST00000557427 SLC2A10O95528 541 aa10.94□□□□□ -0.66
SHMT2-230ENST00000557427 IFNGP01579 166 aa10.94□□□□□ -0.66
SHMT2-230ENST00000557427 LIMS3P0CW19 117 aa10.94□□□□□ -0.66
SHMT2-230ENST00000557427 LIMS4P0CW20 117 aa10.94□□□□□ -0.66
SHMT2-230ENST00000557427 TACR3P29371 465 aa10.94□□□□□ -0.66
SHMT2-230ENST00000557427 OR2B6P58173 313 aa10.94□□□□□ -0.66
SHMT2-230ENST00000557427 ACSM1Q08AH1 577 aa10.94□□□□□ -0.66
SHMT2-230ENST00000557427 DOC2BQ14184 412 aa10.94□□□□□ -0.66
SHMT2-230ENST00000557427 TSC22D1Q15714 1073 aa10.94□□□□□ -0.66
SHMT2-230ENST00000557427 ZNF672Q499Z4 452 aaPredicted RBP10.94□□□□□ -0.66
SHMT2-230ENST00000557427 THSD4Q6ZMP0 1018 aa10.94□□□□□ -0.66
SHMT2-230ENST00000557427 MEPCEQ7L2J0 689 aaKnown RBP10.94□□□□□ -0.66
SHMT2-230ENST00000557427 OR6Q1Q8NGQ2 317 aa10.94□□□□□ -0.66
SHMT2-230ENST00000557427 LIPHQ8WWY8 451 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms