RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	SDHA	P31040	664 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	CASR	P41180	1078 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	CX3CR1	P49238	355 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	GPR85	P60893	370 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	EEF1A2	Q05639	463 aa	Known RBP	4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	CAMK2D	Q13557	499 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	UBXN2B	Q14CS0	331 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	NSDHL	Q15738	373 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	FAM189A2	Q15884	450 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	DEFB133	Q30KQ1	61 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	ACTBL2	Q562R1	376 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	DMRTC1	Q5HYR2	192 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	EOGT	Q5NDL2	527 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	LRRTM1	Q86UE6	522 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	C19orf47	Q8N9M1	422 aa	Known RBP	4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	FAM71C	Q8NEG0	241 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	MARCH1	Q8TCQ1	289 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	SLC2A12	Q8TD20	617 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	NUDCD2	Q8WVJ2	157 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	ENKD1	Q9H0I2	346 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	POLM	Q9NP87	494 aa	Predicted RBP	4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	PCDHGA9	Q9Y5G4	932 aa	Known RBP	4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	NPFFR2	Q9Y5X5	522 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZFC3H1	O60293	1989 aa	Known RBP	4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	TRAV36DV7	A0A075B6V5	113 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	TMED7-TICAM2	A0A0A6YYA0	188 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005		A0A0B4J293	547 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	LOC107986453	A0A1B0GWG9	222 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	RNASEK-C17orf49	H0YIS7	233 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	LILRB3	O75022	631 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	IL33	O95760	270 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	HNF1A	P20823	631 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	AVPR2	P30518	371 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	DIO1	P49895	249 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	BLK	P51451	505 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	MLF1	P58340	268 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	RPL23A	P62750	156 aa	Known RBP	4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZNF77	Q15935	545 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	MPEG1	Q2M385	716 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	METRNL	Q641Q3	311 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	B3GNTL1	Q67FW5	361 aa	Predicted RBP	4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	TANGO2	Q6ICL3	276 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	ADAD2	Q8NCV1	583 aa	Known RBP	4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR11H4	Q8NGC9	324 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZG16B	Q96DA0	208 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	CNRIP1	Q96F85	164 aa	Predicted RBP	4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	FBXO34	Q9NWN3	711 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	GPR160	Q9UJ42	338 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	RCL1	Q9Y2P8	373 aa	Known RBP	4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	TMED7	Q9Y3B3	224 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	FBXO7	Q9Y3I1	522 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	NEUROG3	Q9Y4Z2	214 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	ANKRD36	A6QL64	1941 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	TRBV11-1	A0A0K0K1C0	115 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	STMND1	H3BQB6	276 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZNF264	O43296	627 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	BRINP1	O60477	761 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	ICOSLG	O75144	302 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	CTAG2	O75638	210 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	AQP8	O94778	261 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	MPC2	O95563	127 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	IL5	P05113	134 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	IGFBP4	P22692	258 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	CD80	P33681	288 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	CCR2	P41597	374 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	HMGA2	P52926	109 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	C21orf58	P58505	322 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	SRY	Q05066	204 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	NOG	Q13253	232 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	RUNX2	Q13950	521 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	ELOC	Q15369	112 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	SGCB	Q16585	318 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	C4orf17	Q53FE4	359 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	TMEM244	Q5VVB8	128 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	LIPN	Q5VXI9	398 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	MCEMP1	Q8IX19	187 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	PLPP5	Q8NEB5	264 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	SLC30A7	Q8NEW0	376 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	TSTD1	Q8NFU3	115 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	HAVCR2	Q8TDQ0	301 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	PIGT	Q969N2	578 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	CPNE4	Q96A23	557 aa	Predicted RBP	4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	DCBLD2	Q96PD2	775 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	USB1	Q9BQ65	265 aa	Known RBP	4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZFP64	Q9NPA5	681 aa		4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	FAM212B	Q9NTI7	297 aa	Predicted RBP	4.54	□□□□□ -1.68
SYNE2-223	ENST00000557005	PATJ	Q8NI35	1801 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	PHF1	O43189	567 aa	Predicted RBP	4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	SLC34A2	O95436	690 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	EDN3	P14138	238 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	NFYB	P25208	207 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	BID	P55957	195 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	DUSP2	Q05923	314 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	EIF4EBP2	Q13542	120 aa	Predicted RBP	4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	FXN	Q16595	210 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	SLC22A25	Q6T423	547 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	UQCC3	Q6UW78	93 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	CD300LD	Q6UXZ3	194 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	SLC22A24	Q8N4F4	322 aa		4.53	□□□□□ -1.68
SYNE2-223	ENST00000557005	FAM160A2	Q8N612	972 aa	Predicted RBP	4.53	□□□□□ -1.68

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