RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 TTC33Q6PID6 262 aaPredicted RBP3.42□□□□□ -1.86
PRPF39-209ENST00000556353 CES3Q6UWW8 571 aa3.42□□□□□ -1.86
PRPF39-209ENST00000556353 IDO2Q6ZQW0 420 aa3.42□□□□□ -1.86
PRPF39-209ENST00000556353 RTL4Q6ZR62 310 aa3.42□□□□□ -1.86
PRPF39-209ENST00000556353 APTXQ7Z2E3 356 aaKnown RBP3.42□□□□□ -1.86
PRPF39-209ENST00000556353 SETD3Q86TU7 594 aaPredicted RBP3.42□□□□□ -1.86
PRPF39-209ENST00000556353 ZNF573Q86YE8 665 aa3.42□□□□□ -1.86
PRPF39-209ENST00000556353 NUDCD3Q8IVD9 361 aa3.42□□□□□ -1.86
PRPF39-209ENST00000556353 UBQLNLQ8IYU4 475 aa3.42□□□□□ -1.86
PRPF39-209ENST00000556353 NPWQ8N729 165 aa3.42□□□□□ -1.86
PRPF39-209ENST00000556353 NHLRC2Q8NBF2 726 aa3.42□□□□□ -1.86
PRPF39-209ENST00000556353 NEK11Q8NG66 645 aa3.42□□□□□ -1.86
PRPF39-209ENST00000556353 PDXPQ96GD0 296 aa3.42□□□□□ -1.86
PRPF39-209ENST00000556353 C12orf66Q96MD2 445 aa3.42□□□□□ -1.86
PRPF39-209ENST00000556353 ERGIC2Q96RQ1 377 aa3.42□□□□□ -1.86
PRPF39-209ENST00000556353 CCNL2Q96S94 520 aaPredicted RBP3.42□□□□□ -1.86
PRPF39-209ENST00000556353 PEBP4Q96S96 227 aa3.42□□□□□ -1.86
PRPF39-209ENST00000556353 INTS14Q96SY0 518 aa3.42□□□□□ -1.86
PRPF39-209ENST00000556353 TSC22D3Q99576 134 aa3.42□□□□□ -1.86
PRPF39-209ENST00000556353 C11orf70Q9BRQ4 267 aa3.42□□□□□ -1.86
PRPF39-209ENST00000556353 TUBGCP2Q9BSJ2 902 aa3.42□□□□□ -1.86
PRPF39-209ENST00000556353 SPATA16Q9BXB7 569 aa3.42□□□□□ -1.86
PRPF39-209ENST00000556353 SLC17A9Q9BYT1 436 aa3.42□□□□□ -1.86
PRPF39-209ENST00000556353 ZDHHC6Q9H6R6 413 aa3.42□□□□□ -1.86
PRPF39-209ENST00000556353 ZNF665Q9H7R5 613 aa3.42□□□□□ -1.86
PRPF39-209ENST00000556353 C19orf12Q9NSK7 152 aa3.42□□□□□ -1.86
PRPF39-209ENST00000556353 EXD2Q9NVH0 621 aa3.42□□□□□ -1.86
PRPF39-209ENST00000556353 EURLQ9NYK6 297 aa3.42□□□□□ -1.86
PRPF39-209ENST00000556353 DCDC2Q9UHG0 476 aa3.42□□□□□ -1.86
PRPF39-209ENST00000556353 TDRKHQ9Y2W6 561 aaKnown RBP3.42□□□□□ -1.86
PRPF39-209ENST00000556353 IFT52Q9Y366 437 aa3.42□□□□□ -1.86
PRPF39-209ENST00000556353 MFHAS1Q9Y4C4 1052 aa3.42□□□□□ -1.86
PRPF39-209ENST00000556353 TEX264Q9Y6I9 313 aa3.42□□□□□ -1.86
PRPF39-209ENST00000556353 F8P00451 2351 aa3.42□□□□□ -1.86
PRPF39-209ENST00000556353 ZANQ9Y493 2812 aa3.42□□□□□ -1.86
PRPF39-209ENST00000556353 AKAP6Q13023 2319 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 A0A087WZY1 265 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 TRBV2A0A0J9YWF9 115 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 TSPAN11A1L157 253 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 OOEPA6NGQ2 149 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 GABRR3A8MPY1 467 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 RNF212BA8MTL3 300 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 LGALS8O00214 317 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 SAP18O00422 153 aaKnown RBP3.41□□□□□ -1.86
PRPF39-209ENST00000556353 CCSO14618 274 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 B4GALT2O60909 372 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 PFDN1O60925 122 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 CLPXO76031 633 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 OR6A2O95222 327 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 LYPD3O95274 346 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 RAB3DO95716 219 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 LSM8O95777 96 aaKnown RBP3.41□□□□□ -1.86
PRPF39-209ENST00000556353 CRYZL1O95825 349 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 GP1BAP07359 652 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 FCGR3AP08637 254 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 OR8G3PP0DMU2 310 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 HSD17B1P14061 328 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 ZNF18P17022 549 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 ELK1P19419 428 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 MSR1P21757 451 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 IFNA8P32881 189 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 NUDT1P36639 197 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 CEBPDP49716 269 aaPredicted RBP3.41□□□□□ -1.86
PRPF39-209ENST00000556353 SERPINB9P50453 376 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 PRPS1P60891 318 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 RPS21P63220 83 aaKnown RBP3.41□□□□□ -1.86
PRPF39-209ENST00000556353 FOLH1Q04609 750 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 MERTKQ12866 999 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 PDZK1IP1Q13113 114 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 C1orf61Q13536 156 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 IHHQ14623 411 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 UAP1Q16222 522 aaPredicted RBP3.41□□□□□ -1.86
PRPF39-209ENST00000556353 WHAMMP3Q1A5X7 153 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 ISXQ2M1V0 245 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 NADK2Q4G0N4 442 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 C14orf28Q4W4Y0 310 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 YIF1BQ5BJH7 314 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 CARD16Q5EG05 197 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 PAGE2BQ5JRK9 111 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 C9orf129Q5T035 196 aaKnown RBP3.41□□□□□ -1.86
PRPF39-209ENST00000556353 LCE1CQ5T751 118 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 LCE1BQ5T7P3 118 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 LRRC38Q5VT99 294 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 C3orf33Q6P1S2 294 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 BZW1Q7L1Q6 419 aaKnown RBP3.41□□□□□ -1.86
PRPF39-209ENST00000556353 ARCQ7LC44 396 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 PARGQ86W56 976 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 MISPQ8IVT2 679 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 ENTHD1Q8IYW4 607 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 LINC00518Q8N0U6 118 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 NATD1Q8N6N6 113 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 ZNF491Q8N8L2 437 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.41□□□□□ -1.86
PRPF39-209ENST00000556353 SNX31Q8N9S9 440 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 TMEM35BQ8NCS4 154 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 BPIFCQ8NFQ6 507 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 FAM172AQ8WUF8 416 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 PYDC1Q8WXC3 89 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 RXFP2Q8WXD0 754 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 BCL2L2Q92843 193 aaPredicted RBP3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms