RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 IGKV1D-43A0A0B4J1Z2 117 aa10.87□□□□□ -0.67
PTCH1-221ENST00000550914 ISPDA4D126 451 aa10.87□□□□□ -0.67
PTCH1-221ENST00000550914 IFNA14P01570 189 aa10.87□□□□□ -0.67
PTCH1-221ENST00000550914 IGHMP01871 453 aa10.87□□□□□ -0.67
PTCH1-221ENST00000550914 HKR1P10072 659 aa10.87□□□□□ -0.67
PTCH1-221ENST00000550914 GUCA1AP43080 201 aaPredicted RBP10.87□□□□□ -0.67
PTCH1-221ENST00000550914 ARHGDIAP52565 204 aa10.87□□□□□ -0.67
PTCH1-221ENST00000550914 RPL27P61353 136 aaKnown RBP10.87□□□□□ -0.67
PTCH1-221ENST00000550914 ERVK-25P63136 954 aa10.87□□□□□ -0.67
PTCH1-221ENST00000550914 LCN2P80188 198 aa10.87□□□□□ -0.67
PTCH1-221ENST00000550914 FMODQ06828 376 aa10.87□□□□□ -0.67
PTCH1-221ENST00000550914 CYLC2Q14093 348 aaPredicted RBP10.87□□□□□ -0.67
PTCH1-221ENST00000550914 ALG10Q5BKT4 473 aa10.87□□□□□ -0.67
PTCH1-221ENST00000550914 PRR31Q5SQ13 230 aa10.87□□□□□ -0.67
PTCH1-221ENST00000550914 METTL21CQ5VZV1 264 aa10.87□□□□□ -0.67
PTCH1-221ENST00000550914 NANOGP8Q6NSW7 305 aa10.87□□□□□ -0.67
PTCH1-221ENST00000550914 RBMS3Q6XE24 437 aaKnown RBP10.87□□□□□ -0.67
PTCH1-221ENST00000550914 RFPL4BQ6ZWI9 263 aa10.87□□□□□ -0.67
PTCH1-221ENST00000550914 CALHM3Q86XJ0 350 aa10.87□□□□□ -0.67
PTCH1-221ENST00000550914 SPICQ8N5J4 248 aa10.87□□□□□ -0.67
PTCH1-221ENST00000550914 OR8J3Q8NGG0 315 aa10.87□□□□□ -0.67
PTCH1-221ENST00000550914 ABHD4Q8TB40 342 aa10.87□□□□□ -0.67
PTCH1-221ENST00000550914 NSMAFQ92636 917 aa10.87□□□□□ -0.67
PTCH1-221ENST00000550914 ATP6V1G3Q96LB4 118 aa10.87□□□□□ -0.67
PTCH1-221ENST00000550914 SIKE1Q9BRV8 207 aa10.87□□□□□ -0.67
PTCH1-221ENST00000550914 NPTNQ9Y639 398 aa10.87□□□□□ -0.67
PTCH1-221ENST00000550914 VWFP04275 2813 aa10.87□□□□□ -0.67
PTCH1-221ENST00000550914 NOTCH1P46531 2555 aa10.86□□□□□ -0.67
PTCH1-221ENST00000550914 A6NIZ1 184 aa10.86□□□□□ -0.67
PTCH1-221ENST00000550914 NPPAP01160 153 aa10.86□□□□□ -0.67
PTCH1-221ENST00000550914 IGHV2-70P01814 119 aa10.86□□□□□ -0.67
PTCH1-221ENST00000550914 COX5BP10606 129 aa10.86□□□□□ -0.67
PTCH1-221ENST00000550914 ZFP36P26651 326 aaKnown RBP10.86□□□□□ -0.67
PTCH1-221ENST00000550914 LAP3P28838 519 aa10.86□□□□□ -0.67
PTCH1-221ENST00000550914 RAP1BP61224 184 aa10.86□□□□□ -0.67
PTCH1-221ENST00000550914 RAP1AP62834 184 aa10.86□□□□□ -0.67
PTCH1-221ENST00000550914 CDK5R2Q13319 367 aa10.86□□□□□ -0.67
PTCH1-221ENST00000550914 PIN1Q13526 163 aaPredicted RBP10.86□□□□□ -0.67
PTCH1-221ENST00000550914 LAPTM4AQ15012 233 aa10.86□□□□□ -0.67
PTCH1-221ENST00000550914 ANKDD1AQ495B1 522 aa10.86□□□□□ -0.67
PTCH1-221ENST00000550914 TMEM155Q4W5P6 130 aa10.86□□□□□ -0.67
PTCH1-221ENST00000550914 MTX3Q5HYI7 312 aa10.86□□□□□ -0.67
PTCH1-221ENST00000550914 COQ5Q5HYK3 327 aa10.86□□□□□ -0.67
PTCH1-221ENST00000550914 ERICH5Q6P6B1 374 aa10.86□□□□□ -0.67
PTCH1-221ENST00000550914 SHISA2Q6UWI4 295 aa10.86□□□□□ -0.67
PTCH1-221ENST00000550914 DOK3Q7L591 496 aa10.86□□□□□ -0.67
PTCH1-221ENST00000550914 ZNF283Q8N7M2 679 aa10.86□□□□□ -0.67
PTCH1-221ENST00000550914 NPEPL1Q8NDH3 523 aa10.86□□□□□ -0.67
PTCH1-221ENST00000550914 DEFB108BQ8NET1 73 aa10.86□□□□□ -0.67
PTCH1-221ENST00000550914 C4orf45Q96LM5 186 aa10.86□□□□□ -0.67
PTCH1-221ENST00000550914 SAMD8Q96LT4 415 aa10.86□□□□□ -0.67
PTCH1-221ENST00000550914 GPA33Q99795 319 aa10.86□□□□□ -0.67
PTCH1-221ENST00000550914 ZNF696Q9H7X3 374 aa10.86□□□□□ -0.67
PTCH1-221ENST00000550914 MAN2C1Q9NTJ4 1040 aa10.86□□□□□ -0.67
PTCH1-221ENST00000550914 MRGBPQ9NV56 204 aa10.86□□□□□ -0.67
PTCH1-221ENST00000550914 UBAP1Q9NZ09 502 aa10.86□□□□□ -0.67
PTCH1-221ENST00000550914 PURGQ9UJV8 347 aaKnown RBP10.86□□□□□ -0.67
PTCH1-221ENST00000550914 NDRG4Q9ULP0 352 aaKnown RBP10.86□□□□□ -0.67
PTCH1-221ENST00000550914 C12orf71A8MTZ7 269 aa10.85□□□□□ -0.67
PTCH1-221ENST00000550914 A8MXK9 166 aa10.85□□□□□ -0.67
PTCH1-221ENST00000550914 TIMM8AO60220 97 aaPredicted RBP10.85□□□□□ -0.67
PTCH1-221ENST00000550914 NGFP01138 241 aa10.85□□□□□ -0.67
PTCH1-221ENST00000550914 TNFRSF1AP19438 455 aa10.85□□□□□ -0.67
PTCH1-221ENST00000550914 GSTM3P21266 225 aa10.85□□□□□ -0.67
PTCH1-221ENST00000550914 MSR1P21757 451 aa10.85□□□□□ -0.67
PTCH1-221ENST00000550914 TNFSF4P23510 183 aa10.85□□□□□ -0.67
PTCH1-221ENST00000550914 CPT2P23786 658 aa10.85□□□□□ -0.67
PTCH1-221ENST00000550914 PRTN3P24158 256 aa10.85□□□□□ -0.67
PTCH1-221ENST00000550914 IFNA8P32881 189 aa10.85□□□□□ -0.67
PTCH1-221ENST00000550914 TNFAIP6P98066 277 aaPredicted RBP10.85□□□□□ -0.67
PTCH1-221ENST00000550914 ST3GAL3Q11203 375 aa10.85□□□□□ -0.67
PTCH1-221ENST00000550914 PSG7Q13046 419 aa10.85□□□□□ -0.67
PTCH1-221ENST00000550914 ARMCX4Q5H9R4 360 aa10.85□□□□□ -0.67
PTCH1-221ENST00000550914 ZNF774Q6NX45 483 aa10.85□□□□□ -0.67
PTCH1-221ENST00000550914 KLHL36Q8N4N3 616 aa10.85□□□□□ -0.67
PTCH1-221ENST00000550914 GEMIN6Q8WXD5 167 aaKnown RBP10.85□□□□□ -0.67
PTCH1-221ENST00000550914 LRRC58Q96CX6 371 aa10.85□□□□□ -0.67
PTCH1-221ENST00000550914 BPIFA2Q96DR5 249 aa10.85□□□□□ -0.67
PTCH1-221ENST00000550914 MAGEB18Q96M61 343 aa10.85□□□□□ -0.67
PTCH1-221ENST00000550914 ECSITQ9BQ95 431 aa10.85□□□□□ -0.67
PTCH1-221ENST00000550914 PATZ1Q9HBE1 687 aaKnown RBP10.85□□□□□ -0.67
PTCH1-221ENST00000550914 MSL2Q9HCI7 577 aa10.85□□□□□ -0.67
PTCH1-221ENST00000550914 TMEM106BQ9NUM4 274 aa10.85□□□□□ -0.67
PTCH1-221ENST00000550914 INTS9Q9NV88 658 aaKnown RBP10.85□□□□□ -0.67
PTCH1-221ENST00000550914 TBCCD1Q9NVR7 557 aa10.85□□□□□ -0.67
PTCH1-221ENST00000550914 PLEK2Q9NYT0 353 aa10.85□□□□□ -0.67
PTCH1-221ENST00000550914 NUP50Q9UKX7 468 aa10.85□□□□□ -0.67
PTCH1-221ENST00000550914 PPIAL4AQ9Y536 164 aa10.85□□□□□ -0.67
PTCH1-221ENST00000550914 IFNL4K9M1U5 179 aa10.84□□□□□ -0.67
PTCH1-221ENST00000550914 FXYD1O00168 92 aa10.84□□□□□ -0.67
PTCH1-221ENST00000550914 FBP2O00757 339 aa10.84□□□□□ -0.67
PTCH1-221ENST00000550914 SURF4O15260 269 aa10.84□□□□□ -0.67
PTCH1-221ENST00000550914 TMPRSS2O15393 492 aa10.84□□□□□ -0.67
PTCH1-221ENST00000550914 ABHD16AO95870 558 aa10.84□□□□□ -0.67
PTCH1-221ENST00000550914 SBK2P0C263 348 aa10.84□□□□□ -0.67
PTCH1-221ENST00000550914 ZNF12P17014 697 aa10.84□□□□□ -0.67
PTCH1-221ENST00000550914 TNFRSF1BP20333 461 aa10.84□□□□□ -0.67
PTCH1-221ENST00000550914 KITLGP21583 273 aa10.84□□□□□ -0.67
PTCH1-221ENST00000550914 SLC6A9P48067 706 aa10.84□□□□□ -0.67
PTCH1-221ENST00000550914 ZNF154Q13106 437 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms