RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 TWSG1Q9GZX9 223 aa14.77□□□□□ -0.04
CUX1-213ENST00000549414 CALHM2Q9HA72 323 aa14.77□□□□□ -0.04
CUX1-213ENST00000549414 MMP25Q9NPA2 562 aa14.77□□□□□ -0.04
CUX1-213ENST00000549414 HRGP04196 525 aa14.77□□□□□ -0.05
CUX1-213ENST00000549414 CD46P15529 392 aa14.77□□□□□ -0.05
CUX1-213ENST00000549414 RFC3P40938 356 aa14.77□□□□□ -0.05
CUX1-213ENST00000549414 ZNF616Q08AN1 781 aa14.77□□□□□ -0.05
CUX1-213ENST00000549414 HLA-BQ31612 363 aa14.77□□□□□ -0.05
CUX1-213ENST00000549414 TMEM201Q5SNT2 666 aa14.77□□□□□ -0.05
CUX1-213ENST00000549414 OR6V1Q8N148 313 aa14.77□□□□□ -0.05
CUX1-213ENST00000549414 OR51E1Q8TCB6 317 aa14.77□□□□□ -0.05
CUX1-213ENST00000549414 ANKRD9Q96BM1 317 aaPredicted RBP14.77□□□□□ -0.05
CUX1-213ENST00000549414 UTP23Q9BRU9 249 aaKnown RBP14.77□□□□□ -0.05
CUX1-213ENST00000549414 LOC100289279A0A1B0GTE1 492 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 QDPRP09417 244 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 FCARP24071 287 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 CARD18P57730 90 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 MEF2DQ14814 521 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 C3P1Q6ZMU1 363 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 CRIPAKQ8N1N5 446 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 OR6M1Q8NGM8 313 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 LILRB4Q8NHJ6 448 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 TAAR8Q969N4 342 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 GON7Q9BXV9 100 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 SLC22A11Q9NSA0 550 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 FLRT3Q9NZU0 649 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 TMEM235A6NFC5 223 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 NUPL2O15504 423 aaKnown RBP14.76□□□□□ -0.05
CUX1-213ENST00000549414 EPXP11678 715 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 ZNF35P13682 527 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 TAS2R20P59543 309 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 PMPCAQ10713 525 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 SELENBP1Q13228 472 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 ZNF546Q86UE3 836 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 OR4K15Q8NH41 348 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 STOML3Q8TAV4 291 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 NINJ1Q92982 152 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 RALGAPA2Q2PPJ7 1873 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 HSPB6O14558 160 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 EIF1P41567 113 aaKnown RBP14.76□□□□□ -0.05
CUX1-213ENST00000549414 GNMTQ14749 295 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 TMEM71Q6P5X7 295 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 FIP1L1Q6UN15 594 aaKnown RBP14.76□□□□□ -0.05
CUX1-213ENST00000549414 GRAMD2AQ8IUY3 354 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 ZNF679Q8IYX0 411 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 OR6F1Q8NGZ6 308 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 SLAMF6Q96DU3 332 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 TSNAXQ99598 290 aaKnown RBP14.76□□□□□ -0.05
CUX1-213ENST00000549414 KLK11Q9UBX7 282 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 BOKQ9UMX3 212 aaPredicted RBP14.76□□□□□ -0.05
CUX1-213ENST00000549414 SLC5A6Q9Y289 635 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 WDR90Q96KV7 1748 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 POU2F2P09086 479 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 UBCP0CG48 685 aaKnown RBP14.76□□□□□ -0.05
CUX1-213ENST00000549414 ATF1P18846 271 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 CLDN6P56747 220 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 BDH1Q02338 343 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 C1QL3Q5VWW1 255 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 STAC2Q6ZMT1 411 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 SGCZQ96LD1 299 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 DDOQ99489 341 aa14.76□□□□□ -0.05
CUX1-213ENST00000549414 PAPOLGQ9BWT3 736 aaKnown RBP14.76□□□□□ -0.05
CUX1-213ENST00000549414 FAM166BA8MTA8 275 aa14.75□□□□□ -0.05
CUX1-213ENST00000549414 C4orf51C9J302 202 aa14.75□□□□□ -0.05
CUX1-213ENST00000549414 AIPO00170 330 aa14.75□□□□□ -0.05
CUX1-213ENST00000549414 AGPAT2O15120 278 aa14.75□□□□□ -0.05
CUX1-213ENST00000549414 HOXC4P09017 264 aaPredicted RBP14.75□□□□□ -0.05
CUX1-213ENST00000549414 ZNF806P0C7X5 589 aa14.75□□□□□ -0.05
CUX1-213ENST00000549414 CD226Q15762 336 aa14.75□□□□□ -0.05
CUX1-213ENST00000549414 STX12Q86Y82 276 aa14.75□□□□□ -0.05
CUX1-213ENST00000549414 SLC22A24Q8N4F4 322 aa14.75□□□□□ -0.05
CUX1-213ENST00000549414 OR1N1Q8NGS0 311 aa14.75□□□□□ -0.05
CUX1-213ENST00000549414 TXNIPQ9H3M7 391 aa14.75□□□□□ -0.05
CUX1-213ENST00000549414 CDH20Q9HBT6 801 aa14.75□□□□□ -0.05
CUX1-213ENST00000549414 CYR61O00622 381 aa14.75□□□□□ -0.05
CUX1-213ENST00000549414 ICAM2P13598 275 aa14.75□□□□□ -0.05
CUX1-213ENST00000549414 NOVA1P51513 510 aaKnown RBP14.75□□□□□ -0.05
CUX1-213ENST00000549414 RAP2BP61225 183 aa14.75□□□□□ -0.05
CUX1-213ENST00000549414 FMODQ06828 376 aa14.75□□□□□ -0.05
CUX1-213ENST00000549414 SPEM2Q0P670 501 aa14.75□□□□□ -0.05
CUX1-213ENST00000549414 GLIPR1L1Q6UWM5 242 aa14.75□□□□□ -0.05
CUX1-213ENST00000549414 DHRS13Q6UX07 377 aa14.75□□□□□ -0.05
CUX1-213ENST00000549414 CD300LDQ6UXZ3 194 aa14.75□□□□□ -0.05
CUX1-213ENST00000549414 GTPBP8Q8N3Z3 284 aaPredicted RBP14.75□□□□□ -0.05
CUX1-213ENST00000549414 B9D1Q9UPM9 204 aa14.75□□□□□ -0.05
CUX1-213ENST00000549414 PPA1Q15181 289 aa14.75□□□□□ -0.05
CUX1-213ENST00000549414 EXOSC6Q5RKV6 272 aaKnown RBP14.75□□□□□ -0.05
CUX1-213ENST00000549414 ZNF813Q6ZN06 617 aa14.75□□□□□ -0.05
CUX1-213ENST00000549414 ZC3HAV1Q7Z2W4 902 aaKnown RBP14.75□□□□□ -0.05
CUX1-213ENST00000549414 ZNF321PQ8N8H1 164 aa14.75□□□□□ -0.05
CUX1-213ENST00000549414 OR10K1Q8NGX5 313 aa14.75□□□□□ -0.05
CUX1-213ENST00000549414 IL1F10Q8WWZ1 152 aa14.75□□□□□ -0.05
CUX1-213ENST00000549414 ABHD6Q9BV23 337 aa14.75□□□□□ -0.05
CUX1-213ENST00000549414 SMIM3Q9BZL3 60 aa14.75□□□□□ -0.05
CUX1-213ENST00000549414 PLSCR3Q9NRY6 295 aa14.75□□□□□ -0.05
CUX1-213ENST00000549414 CES1P1Q9UKY3 287 aa14.75□□□□□ -0.05
CUX1-213ENST00000549414 COPS3Q9UNS2 423 aa14.75□□□□□ -0.05
CUX1-213ENST00000549414 DTX4Q9Y2E6 619 aa14.75□□□□□ -0.05
CUX1-213ENST00000549414 WIF1Q9Y5W5 379 aa14.75□□□□□ -0.05
CUX1-213ENST00000549414 ETV7Q9Y603 341 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms