RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 CCDC59Q9P031 241 aaKnown RBP2.66□□□□□ -1.98
VPS29-205ENST00000548539 PDP1Q9P0J1 537 aaPredicted RBP2.66□□□□□ -1.98
VPS29-205ENST00000548539 TBC1D24Q9ULP9 559 aa2.66□□□□□ -1.98
VPS29-205ENST00000548539 SLC17A4Q9Y2C5 497 aa2.66□□□□□ -1.98
VPS29-205ENST00000548539 CAB39Q9Y376 341 aaPredicted RBP2.66□□□□□ -1.98
VPS29-205ENST00000548539 WDR62O43379 1518 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 IGLV11-55A0A075B6I3 123 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 A0A096LNJ9 63 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 NCF1BA6NI72 391 aaPredicted RBP2.65□□□□□ -1.99
VPS29-205ENST00000548539 NCF1CA8MVU1 366 aaPredicted RBP2.65□□□□□ -1.99
VPS29-205ENST00000548539 SUPT3HB4E1H0 165 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 H0YHG0 523 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 AIREO43918 545 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 CLDN11O75508 207 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 CTAG2O75638 210 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 CCNB2O95067 398 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 GABARAPO95166 117 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 RAB3DO95716 219 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 OR5H8P0DN80 308 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 ADRB3P13945 408 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 GSTM3P21266 225 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 OR1E1P30953 314 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 GPX4P36969 197 aaPredicted RBP2.65□□□□□ -1.99
VPS29-205ENST00000548539 MRPL19P49406 292 aaKnown RBP2.65□□□□□ -1.99
VPS29-205ENST00000548539 RAB9AP51151 201 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 SP4Q02446 784 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 MECOMQ03112 1051 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 TCP10Q12799 353 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 TRAM2Q15035 370 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 PSMD5Q16401 504 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 TMEM255AQ5JRV8 349 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 C12orf54Q6X4T0 127 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 HDDC2Q7Z4H3 204 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 ENTHD1Q8IYW4 607 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 OR10J6PQ8NGY7 276 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 BMFQ96LC9 184 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 ZNF285Q96NJ3 590 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 MICU1Q9BPX6 476 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 UCK2Q9BZX2 261 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 ACTR3CQ9C0K3 210 aaPredicted RBP2.65□□□□□ -1.99
VPS29-205ENST00000548539 SLC7A5P2Q9GIP4 190 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 TMEM165Q9HC07 324 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 TMEM9BQ9NQ34 198 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 AHSPQ9NZD4 102 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 PSG8Q9UQ74 426 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 CDC42BPBQ9Y5S2 1711 aa2.65□□□□□ -1.99
VPS29-205ENST00000548539 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.64□□□□□ -1.99
VPS29-205ENST00000548539 IGKV6D-21A0A0A0MT36 114 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 INS-IGF2F8WCM5 200 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 SMKR1H3BMG3 65 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 GOLGA8TH3BQL2 631 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 SLC9A3R1O14745 358 aaPredicted RBP2.64□□□□□ -1.99
VPS29-205ENST00000548539 RDH16O75452 317 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 EIF4EP06730 217 aaKnown RBP2.64□□□□□ -1.99
VPS29-205ENST00000548539 SERPINE2P07093 398 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 GGT1P19440 569 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 CEACAM3P40198 252 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 ZNF138P52744 262 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 UBE2MP61081 183 aaKnown RBP2.64□□□□□ -1.99
VPS29-205ENST00000548539 IRF8Q02556 426 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 RCAN2Q14206 197 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 CAPRIN1Q14444 709 aaKnown RBP2.64□□□□□ -1.99
VPS29-205ENST00000548539 ITIH4Q14624 930 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 GINS1Q14691 196 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 RGNQ15493 299 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 OR7A5Q15622 319 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 HSDL1Q3SXM5 330 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 TSPO2Q5TGU0 170 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 TTC23LQ6PF05 361 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 PLET1Q6UQ28 207 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 TMEM150AQ86TG1 271 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 PCP2Q8IVA1 136 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 ZNF786Q8N393 782 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 PQLC3Q8N755 202 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 Q8N976 141 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 TTC29Q8NA56 475 aaPredicted RBP2.64□□□□□ -1.99
VPS29-205ENST00000548539 OR9G4Q8NGQ1 327 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 OR2A1Q8NGT9 310 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 LRRC29Q8WV35 223 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 SRSF12Q8WXF0 261 aaKnown RBP2.64□□□□□ -1.99
VPS29-205ENST00000548539 CREB3L1Q96BA8 519 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 C8orf44Q96CB5 159 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 DNAJC1Q96KC8 554 aaKnown RBP2.64□□□□□ -1.99
VPS29-205ENST00000548539 COL21A1Q96P44 957 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 XPO6Q96QU8 1125 aaKnown RBP2.64□□□□□ -1.99
VPS29-205ENST00000548539 SLC25A2Q9BXI2 301 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 SLC40A1Q9NP59 571 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 MTCH1Q9NZJ7 389 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 UVRAGQ9P2Y5 699 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 AKNAQ7Z591 1439 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 UBN2Q6ZU65 1347 aa2.64□□□□□ -1.99
VPS29-205ENST00000548539 KBTBD11-OT1A0A1B0GTJ5 212 aa2.63□□□□□ -1.99
VPS29-205ENST00000548539 LYRM9A8MSI8 78 aa2.63□□□□□ -1.99
VPS29-205ENST00000548539 SCAMP2O15127 329 aaKnown RBP2.63□□□□□ -1.99
VPS29-205ENST00000548539 ANGPTL7O43827 346 aa2.63□□□□□ -1.99
VPS29-205ENST00000548539 CD160O95971 181 aa2.63□□□□□ -1.99
VPS29-205ENST00000548539 ARG1P05089 322 aa2.63□□□□□ -1.99
VPS29-205ENST00000548539 CCNB1P14635 433 aa2.63□□□□□ -1.99
VPS29-205ENST00000548539 OMGP23515 440 aa2.63□□□□□ -1.99
VPS29-205ENST00000548539 UCNP55089 124 aa2.63□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms