RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 OR5D18Q8NGL1 313 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 OR52N1Q8NH53 320 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 EDAQ92838 391 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 RSPRY1Q96DX4 576 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 SPHK2Q9NRA0 654 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 MRPL22Q9NWU5 206 aaKnown RBP4.98□□□□□ -1.61
LIMA1-203ENST00000547825 ASIC5Q9NY37 505 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 NTMQ9P121 344 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 ZNF629Q9UEG4 869 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-203ENST00000547825 PURGQ9UJV8 347 aaKnown RBP4.98□□□□□ -1.61
LIMA1-203ENST00000547825 C14orf166Q9Y224 244 aaKnown RBP4.98□□□□□ -1.61
LIMA1-203ENST00000547825 RHBDD3Q9Y3P4 386 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 AKAP6Q13023 2319 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 SPTBN2O15020 2390 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 LOC105371267A0A1B0GV96 52 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 OR5H14A6NHG9 310 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 ZNF98A6NK75 572 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 KDM4EB2RXH2 506 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-203ENST00000547825 B9A039 149 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 CASC3O15234 703 aaKnown RBP4.98□□□□□ -1.61
LIMA1-203ENST00000547825 CTNSO60931 367 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 CSF1P09603 554 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 OR13C7P0DN81 318 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 NQO2P16083 231 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 POU3F4P49335 361 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 RAB28P51157 221 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 ZXDAP98168 799 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 TNK1Q13470 666 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 SNTB1Q13884 538 aaKnown RBP4.98□□□□□ -1.61
LIMA1-203ENST00000547825 HLXQ14774 488 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-203ENST00000547825 GLYR1Q49A26 553 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-203ENST00000547825 SLC22A6Q4U2R8 563 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 UBE2NLQ5JXB2 153 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 AADACL4Q5VUY2 407 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 GPR139Q6DWJ6 353 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 PAPD4Q6PIY7 484 aaKnown RBP4.98□□□□□ -1.61
LIMA1-203ENST00000547825 TMEM64Q6YI46 380 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 NUP54Q7Z3B4 507 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 ASPGQ86U10 573 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 PPP1R3BQ86XI6 285 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 MAML2Q8IZL2 1156 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-203ENST00000547825 BPIFCQ8NFQ6 507 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 OR52H1Q8NGJ2 320 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 OR2A12Q8NGT7 310 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 OR4Q3Q8NH05 313 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 UBTD2Q8WUN7 234 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 FAM71F1Q96KD3 344 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-203ENST00000547825 Q96M85 177 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 WDFY2Q96P53 400 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 LRRC3BQ96PB8 259 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 DGAT2Q96PD7 388 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 MYADMQ96S97 322 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 FOXB1Q99853 325 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 SSX3Q99909 188 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 SELENOIQ9C0D9 397 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 LDAHQ9H6V9 325 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 ELOVL3Q9HB03 270 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 APMAPQ9HDC9 416 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 HRASLS2Q9NWW9 162 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 CCL26Q9Y258 94 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 FAM96BQ9Y3D0 163 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 ZNF175Q9Y473 711 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 APC2O95996 2303 aa4.98□□□□□ -1.61
LIMA1-203ENST00000547825 A0A1B0GTH9 108 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 KCNAB3O43448 404 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 KCNJ13O60928 360 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 CSTBP04080 98 aaKnown RBP4.97□□□□□ -1.61
LIMA1-203ENST00000547825 ERCC1P07992 297 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-203ENST00000547825 DBHP09172 617 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 H2BFMP0C1H6 154 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 AVPR2P30518 371 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 HSD17B2P37059 387 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 KCNJ3P48549 501 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 ARRB1P49407 418 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-203ENST00000547825 GSG1Q2KHT4 349 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 CHRFAM7AQ494W8 412 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 ALG10Q5BKT4 473 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 GLYATL3Q5SZD4 288 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 GPR157Q5UAW9 335 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 LIPNQ5VXI9 398 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 KCTD18Q6PI47 426 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-203ENST00000547825 PARS2Q7L3T8 475 aaKnown RBP4.97□□□□□ -1.61
LIMA1-203ENST00000547825 AMER3Q8N944 861 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 ANKRD53Q8N9V6 530 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 HSD17B11Q8NBQ5 300 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 CAMKVQ8NCB2 501 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 DUSP18Q8NEJ0 188 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 OR2AK2Q8NG84 335 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 LHFPL5Q8TAF8 219 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 TSACCQ96A04 125 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-203ENST00000547825 PEX11GQ96HA9 241 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 C10orf90Q96M02 699 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 JSRP1Q96MG2 331 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-203ENST00000547825 ZNF75AQ96N20 296 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 SPACA5Q96QH8 159 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 NXF2Q9GZY0 626 aaKnown RBP4.97□□□□□ -1.61
LIMA1-203ENST00000547825 RETREG1Q9H6L5 497 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 EVA1AQ9H8M9 152 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 C19orf73Q9NVV2 129 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 ZNF443Q9Y2A4 671 aaPredicted RBP4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms