RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 RECKO95980 971 aa12.99□□□□□ -0.33
LIMS1-215ENST00000544547 SERPINA2P20848 420 aa12.99□□□□□ -0.33
LIMS1-215ENST00000544547 EIF2S3P41091 472 aaKnown RBP12.99□□□□□ -0.33
LIMS1-215ENST00000544547 ARF3P61204 181 aaPredicted RBP12.99□□□□□ -0.33
LIMS1-215ENST00000544547 POLR2GP62487 172 aaKnown RBP eCLIP12.99□□□□□ -0.33
LIMS1-215ENST00000544547 ARF1P84077 181 aaKnown RBP12.99□□□□□ -0.33
LIMS1-215ENST00000544547 ASTLQ6HA08 431 aaPredicted RBP12.99□□□□□ -0.33
LIMS1-215ENST00000544547 TANGO2Q6ICL3 276 aa12.99□□□□□ -0.33
LIMS1-215ENST00000544547 OR52R1Q8NGF1 315 aa12.99□□□□□ -0.33
LIMS1-215ENST00000544547 OR52E1Q8NGJ3 308 aa12.99□□□□□ -0.33
LIMS1-215ENST00000544547 ZNF707Q96C28 371 aaPredicted RBP12.99□□□□□ -0.33
LIMS1-215ENST00000544547 ICKQ9UPZ9 632 aa12.99□□□□□ -0.33
LIMS1-215ENST00000544547 TMEM212A6NML5 194 aa12.99□□□□□ -0.33
LIMS1-215ENST00000544547 DUX1O43812 170 aa12.99□□□□□ -0.33
LIMS1-215ENST00000544547 EIF3GO75821 320 aaKnown RBP eCLIP12.99□□□□□ -0.33
LIMS1-215ENST00000544547 CPMP14384 443 aa12.99□□□□□ -0.33
LIMS1-215ENST00000544547 HTRA3P83110 453 aa12.99□□□□□ -0.33
LIMS1-215ENST00000544547 CD300LDQ6UXZ3 194 aa12.99□□□□□ -0.33
LIMS1-215ENST00000544547 LDLRAD3Q86YD5 345 aa12.99□□□□□ -0.33
LIMS1-215ENST00000544547 FAM71F1Q96KD3 344 aaPredicted RBP12.99□□□□□ -0.33
LIMS1-215ENST00000544547 SGPP1Q9BX95 441 aa12.99□□□□□ -0.33
LIMS1-215ENST00000544547 NSA2O95478 260 aaKnown RBP12.98□□□□□ -0.33
LIMS1-215ENST00000544547 APBB3O95704 486 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 SEMA4FO95754 770 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 AK1P00568 194 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 IFNA2P01563 188 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 RPA2P15927 270 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 BCL6P41182 706 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 PPIAP62937 165 aaKnown RBP12.98□□□□□ -0.33
LIMS1-215ENST00000544547 PLP2Q04941 152 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 PJVKQ0ZLH3 352 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 NSDHLQ15738 373 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 ABHD17CQ6PCB6 329 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 IL22RA1Q8N6P7 574 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 ZDHHC5Q9C0B5 715 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 CRLF2Q9HC73 371 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 EXOSC3Q9NQT5 275 aaKnown RBP12.98□□□□□ -0.33
LIMS1-215ENST00000544547 GAR1Q9NY12 217 aaKnown RBP12.98□□□□□ -0.33
LIMS1-215ENST00000544547 EHFQ9NZC4 300 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 ZNF337Q9Y3M9 751 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 XRCC3O43542 346 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 GLSO94925 669 aaPredicted RBP12.98□□□□□ -0.33
LIMS1-215ENST00000544547 FGF2P09038 288 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 NPBWR1P48145 328 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 METAP1P53582 386 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 MRM1Q6IN84 353 aaKnown RBP12.98□□□□□ -0.33
LIMS1-215ENST00000544547 C5orf46Q6UWT4 87 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 MTFP1Q9UDX5 166 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 SLC22A13Q9Y226 551 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 ABCD4O14678 606 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 GP1BAP07359 652 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 GALP22466 123 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 ABCD3P28288 659 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 PCBP4P57723 403 aaKnown RBP12.98□□□□□ -0.33
LIMS1-215ENST00000544547 HNRNPKP61978 463 aaKnown RBP eCLIP12.98□□□□□ -0.33
LIMS1-215ENST00000544547 MEX3BQ6ZN04 569 aaKnown RBP12.98□□□□□ -0.33
LIMS1-215ENST00000544547 SGPP2Q8IWX5 399 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 MARCH1Q8TCQ1 289 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 SLC2A12Q8TD20 617 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 UBL7Q96S82 380 aaPredicted RBP12.98□□□□□ -0.33
LIMS1-215ENST00000544547 INSM2Q96T92 566 aaPredicted RBP12.98□□□□□ -0.33
LIMS1-215ENST00000544547 ADAM29Q9UKF5 820 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 A0A0A6YYC8 382 aaPredicted RBP12.98□□□□□ -0.33
LIMS1-215ENST00000544547 TMEM269A0A1B0GVZ9 245 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 A6NLC8 198 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 I3L1I5 382 aaPredicted RBP12.98□□□□□ -0.33
LIMS1-215ENST00000544547 SMIM6P0DI80 62 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 VSIG10L2P0DP72 767 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 PGCP20142 388 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 FBLP22087 321 aaKnown RBP12.98□□□□□ -0.33
LIMS1-215ENST00000544547 DIO1P49895 249 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 CCINQ13939 588 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 HNRNPA1L2Q32P51 320 aaKnown RBP12.98□□□□□ -0.33
LIMS1-215ENST00000544547 SYS1Q8N2H4 156 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 FKRPQ9H9S5 495 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 IL21Q9HBE4 155 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 ADGRL4Q9HBW9 690 aa12.98□□□□□ -0.33
LIMS1-215ENST00000544547 HIDE1A8MVS5 230 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 CLRN1P58418 232 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 EEF1A2Q05639 463 aaKnown RBP12.97□□□□□ -0.33
LIMS1-215ENST00000544547 PWWP2BQ6NUJ5 590 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 RBMS3Q6XE24 437 aaKnown RBP12.97□□□□□ -0.33
LIMS1-215ENST00000544547 ARIH2OSQ8N7S6 290 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 HPSE2Q8WWQ2 592 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 HEXA-AS1Q9H8Q6 139 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 TUBG2Q9NRH3 451 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 ASXL3Q9C0F0 2248 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 IGHA1P01876 353 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 CTSLP07711 333 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 LIMS1P48059 325 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 HERV-K104P61576 105 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 ARHGAP19Q14CB8 494 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 FAM109BQ6ICB4 259 aaPredicted RBP12.97□□□□□ -0.33
LIMS1-215ENST00000544547 FBXO46Q6PJ61 603 aaPredicted RBP12.97□□□□□ -0.33
LIMS1-215ENST00000544547 CD200R1LQ6Q8B3 271 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 TFAP2EQ6VUC0 442 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 PRR22Q8IZ63 422 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 LPAR4Q99677 370 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 TLNRD1Q9H1K6 362 aa12.97□□□□□ -0.33
LIMS1-215ENST00000544547 SIRT3Q9NTG7 399 aaPredicted RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms