RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 SMURF2Q9HAU4 748 aa14.96□□□□□ -0.01
CLSTN3-214ENST00000542663 CCDC167Q9P0B6 97 aa14.96□□□□□ -0.01
CLSTN3-214ENST00000542663 CORO2BQ9UQ03 480 aa14.96□□□□□ -0.01
CLSTN3-214ENST00000542663 M0QX08 132 aa14.95□□□□□ -0.02
CLSTN3-214ENST00000542663 CD247P20963 164 aa14.95□□□□□ -0.02
CLSTN3-214ENST00000542663 STX1BP61266 288 aa14.95□□□□□ -0.02
CLSTN3-214ENST00000542663 SGCAQ16586 387 aa14.95□□□□□ -0.02
CLSTN3-214ENST00000542663 ZMAT1Q5H9K5 638 aa14.95□□□□□ -0.02
CLSTN3-214ENST00000542663 FAM27BQ5VT28 67 aa14.95□□□□□ -0.02
CLSTN3-214ENST00000542663 C16orf87Q6PH81 154 aa14.95□□□□□ -0.02
CLSTN3-214ENST00000542663 UNQ6126/PRO20091Q6UXV3 157 aa14.95□□□□□ -0.02
CLSTN3-214ENST00000542663 DLEU7Q6UYE1 221 aa14.95□□□□□ -0.02
CLSTN3-214ENST00000542663 Q6ZR03 302 aa14.95□□□□□ -0.02
CLSTN3-214ENST00000542663 NSMAFQ92636 917 aa14.95□□□□□ -0.02
CLSTN3-214ENST00000542663 DACT3Q96B18 629 aaPredicted RBP14.95□□□□□ -0.02
CLSTN3-214ENST00000542663 POFUT1Q9H488 388 aa14.95□□□□□ -0.02
CLSTN3-214ENST00000542663 ARMCX1Q9P291 453 aa14.95□□□□□ -0.02
CLSTN3-214ENST00000542663 USH1CQ9Y6N9 552 aa14.95□□□□□ -0.02
CLSTN3-214ENST00000542663 EVPLLA8MZ36 301 aa14.94□□□□□ -0.02
CLSTN3-214ENST00000542663 TIMM8AO60220 97 aaPredicted RBP14.94□□□□□ -0.02
CLSTN3-214ENST00000542663 ERLIN1O75477 346 aa14.94□□□□□ -0.02
CLSTN3-214ENST00000542663 TSPAN19P0C672 248 aa14.94□□□□□ -0.02
CLSTN3-214ENST00000542663 PPIAL4GP0DN37 164 aa14.94□□□□□ -0.02
CLSTN3-214ENST00000542663 PCGF2P35227 344 aa14.94□□□□□ -0.02
CLSTN3-214ENST00000542663 AQP2P41181 271 aa14.94□□□□□ -0.02
CLSTN3-214ENST00000542663 MTNR1AP48039 350 aa14.94□□□□□ -0.02
CLSTN3-214ENST00000542663 DAP3P51398 398 aaKnown RBP14.94□□□□□ -0.02
CLSTN3-214ENST00000542663 ESCO2Q56NI9 601 aa14.94□□□□□ -0.02
CLSTN3-214ENST00000542663 RUNDC3AQ59EK9 446 aa14.94□□□□□ -0.02
CLSTN3-214ENST00000542663 ZNF774Q6NX45 483 aa14.94□□□□□ -0.02
CLSTN3-214ENST00000542663 SLC25A47Q6Q0C1 308 aa14.94□□□□□ -0.02
CLSTN3-214ENST00000542663 HDDC2Q7Z4H3 204 aa14.94□□□□□ -0.02
CLSTN3-214ENST00000542663 MOSPD2Q8NHP6 518 aa14.94□□□□□ -0.02
CLSTN3-214ENST00000542663 PFN4Q8NHR9 129 aa14.94□□□□□ -0.02
CLSTN3-214ENST00000542663 UPRTQ96BW1 309 aa14.94□□□□□ -0.02
CLSTN3-214ENST00000542663 SAMD8Q96LT4 415 aa14.94□□□□□ -0.02
CLSTN3-214ENST00000542663 INIPQ9NRY2 104 aa14.94□□□□□ -0.02
CLSTN3-214ENST00000542663 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.94□□□□□ -0.02
CLSTN3-214ENST00000542663 OR5V1Q9UGF6 321 aa14.94□□□□□ -0.02
CLSTN3-214ENST00000542663 CEACAM18A8MTB9 384 aa14.93□□□□□ -0.02
CLSTN3-214ENST00000542663 HOXA3O43365 443 aaPredicted RBP14.93□□□□□ -0.02
CLSTN3-214ENST00000542663 MT-ND1P03886 318 aa14.93□□□□□ -0.02
CLSTN3-214ENST00000542663 WNT2P09544 360 aa14.93□□□□□ -0.02
CLSTN3-214ENST00000542663 FUT1P19526 365 aa14.93□□□□□ -0.02
CLSTN3-214ENST00000542663 LAP3P28838 519 aa14.93□□□□□ -0.02
CLSTN3-214ENST00000542663 MDH2P40926 338 aaKnown RBP14.93□□□□□ -0.02
CLSTN3-214ENST00000542663 SELPLGQ14242 412 aa14.93□□□□□ -0.02
CLSTN3-214ENST00000542663 KIR3DL3Q8N743 410 aa14.93□□□□□ -0.02
CLSTN3-214ENST00000542663 CLDN22Q8N7P3 220 aa14.93□□□□□ -0.02
CLSTN3-214ENST00000542663 C11orf65Q8NCR3 313 aa14.93□□□□□ -0.02
CLSTN3-214ENST00000542663 OR2Z1Q8NG97 314 aa14.93□□□□□ -0.02
CLSTN3-214ENST00000542663 ITLN1Q8WWA0 313 aa14.93□□□□□ -0.02
CLSTN3-214ENST00000542663 C4orf45Q96LM5 186 aa14.93□□□□□ -0.02
CLSTN3-214ENST00000542663 ELOVL3Q9HB03 270 aa14.93□□□□□ -0.02
CLSTN3-214ENST00000542663 C20orf141Q9NUB4 165 aa14.93□□□□□ -0.02
CLSTN3-214ENST00000542663 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.93□□□□□ -0.02
CLSTN3-214ENST00000542663 LRCH1Q9Y2L9 728 aa14.93□□□□□ -0.02
CLSTN3-214ENST00000542663 V9GYY5 206 aaPredicted RBP14.93□□□□□ -0.02
CLSTN3-214ENST00000542663 TRAV40A0A0B4J280 105 aa14.92□□□□□ -0.02
CLSTN3-214ENST00000542663 FAM181BA6NEQ2 426 aa14.92□□□□□ -0.02
CLSTN3-214ENST00000542663 OR7A10O76100 309 aa14.92□□□□□ -0.02
CLSTN3-214ENST00000542663 KNG1P01042 644 aa14.92□□□□□ -0.02
CLSTN3-214ENST00000542663 CST2P09228 141 aa14.92□□□□□ -0.02
CLSTN3-214ENST00000542663 TNFRSF1AP19438 455 aa14.92□□□□□ -0.02
CLSTN3-214ENST00000542663 CRYBA2P53672 197 aa14.92□□□□□ -0.02
CLSTN3-214ENST00000542663 RELBQ01201 579 aa14.92□□□□□ -0.02
CLSTN3-214ENST00000542663 CD47Q08722 323 aa14.92□□□□□ -0.02
CLSTN3-214ENST00000542663 TAF11Q15544 211 aa14.92□□□□□ -0.02
CLSTN3-214ENST00000542663 RHOUQ7L0Q8 258 aa14.92□□□□□ -0.02
CLSTN3-214ENST00000542663 NKAIN4Q8IVV8 208 aa14.92□□□□□ -0.02
CLSTN3-214ENST00000542663 ALDH16A1Q8IZ83 802 aa14.92□□□□□ -0.02
CLSTN3-214ENST00000542663 POU5F2Q8N7G0 328 aa14.92□□□□□ -0.02
CLSTN3-214ENST00000542663 TAMM41Q96BW9 452 aa14.92□□□□□ -0.02
CLSTN3-214ENST00000542663 CITED1Q99966 193 aa14.92□□□□□ -0.02
CLSTN3-214ENST00000542663 EBF4Q9BQW3 602 aa14.92□□□□□ -0.02
CLSTN3-214ENST00000542663 PRDM13Q9H4Q3 707 aa14.92□□□□□ -0.02
CLSTN3-214ENST00000542663 NANOGQ9H9S0 305 aa14.92□□□□□ -0.02
CLSTN3-214ENST00000542663 IL19Q9UHD0 177 aa14.92□□□□□ -0.02
CLSTN3-214ENST00000542663 IL20RAQ9UHF4 553 aa14.92□□□□□ -0.02
CLSTN3-214ENST00000542663 PPP1R3CQ9UQK1 317 aa14.92□□□□□ -0.02
CLSTN3-214ENST00000542663 NPIPB13A6NJU9 1138 aa14.91□□□□□ -0.02
CLSTN3-214ENST00000542663 NPIPB4C9JG80 1138 aa14.91□□□□□ -0.02
CLSTN3-214ENST00000542663 TMEM178BH3BS89 294 aa14.91□□□□□ -0.02
CLSTN3-214ENST00000542663 KITLGP21583 273 aa14.91□□□□□ -0.02
CLSTN3-214ENST00000542663 ARHGDIAP52565 204 aa14.91□□□□□ -0.02
CLSTN3-214ENST00000542663 SLC18A1P54219 525 aa14.91□□□□□ -0.02
CLSTN3-214ENST00000542663 ENDOGQ14249 297 aaKnown RBP14.91□□□□□ -0.02
CLSTN3-214ENST00000542663 LAPTM4AQ15012 233 aa14.91□□□□□ -0.02
CLSTN3-214ENST00000542663 CYP51A1Q16850 503 aa14.91□□□□□ -0.02
CLSTN3-214ENST00000542663 DEFB112Q30KQ8 113 aa14.91□□□□□ -0.02
CLSTN3-214ENST00000542663 FOXL2NBQ6ZUU3 175 aa14.91□□□□□ -0.02
CLSTN3-214ENST00000542663 ZER1Q7Z7L7 766 aa14.91□□□□□ -0.02
CLSTN3-214ENST00000542663 TMEM255BQ8WV15 326 aa14.91□□□□□ -0.02
CLSTN3-214ENST00000542663 LIPHQ8WWY8 451 aa14.91□□□□□ -0.02
CLSTN3-214ENST00000542663 OR2V2Q96R30 315 aa14.91□□□□□ -0.02
CLSTN3-214ENST00000542663 SSBP3Q9BWW4 388 aaPredicted RBP14.91□□□□□ -0.02
CLSTN3-214ENST00000542663 TXNIPQ9H3M7 391 aa14.91□□□□□ -0.02
CLSTN3-214ENST00000542663 STX18Q9P2W9 335 aaKnown RBP14.91□□□□□ -0.02
CLSTN3-214ENST00000542663 TIMM10BQ9Y5J6 103 aa14.91□□□□□ -0.02
CLSTN3-214ENST00000542663 IGHV2-70DA0A0C4DH43 119 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms