RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 ZMYND11Q15326 602 aa13.02□□□□□ -0.33
CLSTN3-213ENST00000541953 TTMPQ5BVD1 217 aa13.02□□□□□ -0.33
CLSTN3-213ENST00000541953 FAM27BQ5VT28 67 aa13.02□□□□□ -0.33
CLSTN3-213ENST00000541953 FOXL2NBQ6ZUU3 175 aa13.02□□□□□ -0.33
CLSTN3-213ENST00000541953 CCDC80Q76M96 950 aa13.02□□□□□ -0.33
CLSTN3-213ENST00000541953 CALHM3Q86XJ0 350 aa13.02□□□□□ -0.33
CLSTN3-213ENST00000541953 MICU2Q8IYU8 434 aa13.02□□□□□ -0.33
CLSTN3-213ENST00000541953 LRRC75AQ8NAA5 344 aa13.02□□□□□ -0.33
CLSTN3-213ENST00000541953 SMURF2Q9HAU4 748 aa13.02□□□□□ -0.33
CLSTN3-213ENST00000541953 EMC7Q9NPA0 242 aa13.02□□□□□ -0.33
CLSTN3-213ENST00000541953 TMEM106BQ9NUM4 274 aa13.02□□□□□ -0.33
CLSTN3-213ENST00000541953 RIMS3Q9UJD0 308 aa13.02□□□□□ -0.33
CLSTN3-213ENST00000541953 MDFIC2A0A1B0GVS7 189 aa13.01□□□□□ -0.33
CLSTN3-213ENST00000541953 F5H0A9 414 aaPredicted RBP13.01□□□□□ -0.33
CLSTN3-213ENST00000541953 ANGPT2O15123 496 aa13.01□□□□□ -0.33
CLSTN3-213ENST00000541953 ICMTO60725 284 aa13.01□□□□□ -0.33
CLSTN3-213ENST00000541953 OR5F1O95221 314 aa13.01□□□□□ -0.33
CLSTN3-213ENST00000541953 IGHMP01871 453 aa13.01□□□□□ -0.33
CLSTN3-213ENST00000541953 IGHV4-38-2P0DP08 117 aa13.01□□□□□ -0.33
CLSTN3-213ENST00000541953 ZNF12P17014 697 aa13.01□□□□□ -0.33
CLSTN3-213ENST00000541953 GATA3P23771 443 aa13.01□□□□□ -0.33
CLSTN3-213ENST00000541953 PRTN3P24158 256 aa13.01□□□□□ -0.33
CLSTN3-213ENST00000541953 TNFAIP6P98066 277 aaPredicted RBP13.01□□□□□ -0.33
CLSTN3-213ENST00000541953 CDK5R2Q13319 367 aa13.01□□□□□ -0.33
CLSTN3-213ENST00000541953 MOGQ16653 247 aa13.01□□□□□ -0.33
CLSTN3-213ENST00000541953 ST7LQ8TDW4 575 aa13.01□□□□□ -0.33
CLSTN3-213ENST00000541953 SLC26A7Q8TE54 656 aa13.01□□□□□ -0.33
CLSTN3-213ENST00000541953 LIPHQ8WWY8 451 aa13.01□□□□□ -0.33
CLSTN3-213ENST00000541953 SLC7A6Q92536 515 aa13.01□□□□□ -0.33
CLSTN3-213ENST00000541953 TXNIPQ9H3M7 391 aa13.01□□□□□ -0.33
CLSTN3-213ENST00000541953 ZNF696Q9H7X3 374 aa13.01□□□□□ -0.33
CLSTN3-213ENST00000541953 UNKLQ9H9P5 680 aaKnown RBP13.01□□□□□ -0.33
CLSTN3-213ENST00000541953 HIF3AQ9Y2N7 669 aa13.01□□□□□ -0.33
CLSTN3-213ENST00000541953 INSIG2Q9Y5U4 225 aa13.01□□□□□ -0.33
CLSTN3-213ENST00000541953 PPIAL4EA0A075B759 164 aa13□□□□□ -0.33
CLSTN3-213ENST00000541953 PPIAL4CA0A0B4J2A2 164 aa13□□□□□ -0.33
CLSTN3-213ENST00000541953 A0A1W2PPL8 197 aa13□□□□□ -0.33
CLSTN3-213ENST00000541953 NPIPB13A6NJU9 1138 aa13□□□□□ -0.33
CLSTN3-213ENST00000541953 NPIPB4C9JG80 1138 aa13□□□□□ -0.33
CLSTN3-213ENST00000541953 PPIAL4DF5H284 164 aa13□□□□□ -0.33
CLSTN3-213ENST00000541953 TIMM8AO60220 97 aaPredicted RBP13□□□□□ -0.33
CLSTN3-213ENST00000541953 FOXH1O75593 365 aa13□□□□□ -0.33
CLSTN3-213ENST00000541953 ZNF205O95201 554 aa13□□□□□ -0.33
CLSTN3-213ENST00000541953 CST2P09228 141 aa13□□□□□ -0.33
CLSTN3-213ENST00000541953 PPIAL4FP0DN26 164 aa13□□□□□ -0.33
CLSTN3-213ENST00000541953 FPR2P25090 351 aa13□□□□□ -0.33
CLSTN3-213ENST00000541953 RBM34P42696 430 aaKnown RBP13□□□□□ -0.33
CLSTN3-213ENST00000541953 SLC6A9P48067 706 aa13□□□□□ -0.33
CLSTN3-213ENST00000541953 TAF11Q15544 211 aa13□□□□□ -0.33
CLSTN3-213ENST00000541953 ALG10Q5BKT4 473 aa13□□□□□ -0.33
CLSTN3-213ENST00000541953 ARMCX4Q5H9R4 360 aa13□□□□□ -0.33
CLSTN3-213ENST00000541953 MTX3Q5HYI7 312 aa13□□□□□ -0.33
CLSTN3-213ENST00000541953 AGBL2Q5U5Z8 902 aa13□□□□□ -0.33
CLSTN3-213ENST00000541953 NANOGP8Q6NSW7 305 aa13□□□□□ -0.33
CLSTN3-213ENST00000541953 ZNF283Q8N7M2 679 aa13□□□□□ -0.33
CLSTN3-213ENST00000541953 ITLN1Q8WWA0 313 aa13□□□□□ -0.33
CLSTN3-213ENST00000541953 C4orf45Q96LM5 186 aa13□□□□□ -0.33
CLSTN3-213ENST00000541953 EGLN1Q9GZT9 426 aa13□□□□□ -0.33
CLSTN3-213ENST00000541953 KCNN2Q9H2S1 579 aa13□□□□□ -0.33
CLSTN3-213ENST00000541953 NTN4Q9HB63 628 aa13□□□□□ -0.33
CLSTN3-213ENST00000541953 PATZ1Q9HBE1 687 aaKnown RBP13□□□□□ -0.33
CLSTN3-213ENST00000541953 GMPR2Q9P2T1 348 aaKnown RBP13□□□□□ -0.33
CLSTN3-213ENST00000541953 EIF3KQ9UBQ5 218 aaKnown RBP13□□□□□ -0.33
CLSTN3-213ENST00000541953 NUP50Q9UKX7 468 aa13□□□□□ -0.33
CLSTN3-213ENST00000541953 POLR3KQ9Y2Y1 108 aaPredicted RBP13□□□□□ -0.33
CLSTN3-213ENST00000541953 TRAV27A0A087WT01 109 aa12.99□□□□□ -0.33
CLSTN3-213ENST00000541953 IMPA2O14732 288 aa12.99□□□□□ -0.33
CLSTN3-213ENST00000541953 IGF2P01344 180 aa12.99□□□□□ -0.33
CLSTN3-213ENST00000541953 ZNF26P17031 533 aaPredicted RBP12.99□□□□□ -0.33
CLSTN3-213ENST00000541953 RPL27P61353 136 aaKnown RBP12.99□□□□□ -0.33
CLSTN3-213ENST00000541953 PAX2Q02962 417 aa12.99□□□□□ -0.33
CLSTN3-213ENST00000541953 FOXL1Q12952 345 aa12.99□□□□□ -0.33
CLSTN3-213ENST00000541953 SHISA2Q6UWI4 295 aa12.99□□□□□ -0.33
CLSTN3-213ENST00000541953 HDDC2Q7Z4H3 204 aa12.99□□□□□ -0.33
CLSTN3-213ENST00000541953 SLC30A8Q8IWU4 369 aa12.99□□□□□ -0.33
CLSTN3-213ENST00000541953 OR2Z1Q8NG97 314 aa12.99□□□□□ -0.33
CLSTN3-213ENST00000541953 POP5Q969H6 163 aaKnown RBP12.99□□□□□ -0.33
CLSTN3-213ENST00000541953 ALG12Q9BV10 488 aa12.99□□□□□ -0.33
CLSTN3-213ENST00000541953 MAN2C1Q9NTJ4 1040 aa12.99□□□□□ -0.33
CLSTN3-213ENST00000541953 PLEK2Q9NYT0 353 aa12.99□□□□□ -0.33
CLSTN3-213ENST00000541953 ZDHHC8Q9ULC8 765 aa12.99□□□□□ -0.33
CLSTN3-213ENST00000541953 A4GNTQ9UNA3 340 aa12.99□□□□□ -0.33
CLSTN3-213ENST00000541953 SNX13Q9Y5W8 968 aa12.99□□□□□ -0.33
CLSTN3-213ENST00000541953 AUP1Q9Y679 476 aa12.99□□□□□ -0.33
CLSTN3-213ENST00000541953 NOTCH1P46531 2555 aa12.99□□□□□ -0.33
CLSTN3-213ENST00000541953 A8MXK9 166 aa12.98□□□□□ -0.33
CLSTN3-213ENST00000541953 ABHD16AO95870 558 aa12.98□□□□□ -0.33
CLSTN3-213ENST00000541953 THRBP10828 461 aa12.98□□□□□ -0.33
CLSTN3-213ENST00000541953 IFI30P13284 250 aa12.98□□□□□ -0.33
CLSTN3-213ENST00000541953 CD80P33681 288 aa12.98□□□□□ -0.33
CLSTN3-213ENST00000541953 MMP16P51512 607 aa12.98□□□□□ -0.33
CLSTN3-213ENST00000541953 CTXN1P60606 82 aa12.98□□□□□ -0.33
CLSTN3-213ENST00000541953 BTG1P62324 171 aa12.98□□□□□ -0.33
CLSTN3-213ENST00000541953 SLC3A1Q07837 685 aa12.98□□□□□ -0.33
CLSTN3-213ENST00000541953 SRSF4Q08170 494 aaKnown RBP12.98□□□□□ -0.33
CLSTN3-213ENST00000541953 BAMBIQ13145 260 aa12.98□□□□□ -0.33
CLSTN3-213ENST00000541953 SLC9A3R2Q15599 337 aa12.98□□□□□ -0.33
CLSTN3-213ENST00000541953 INTS11Q5TA45 600 aaKnown RBP12.98□□□□□ -0.33
CLSTN3-213ENST00000541953 LRRC28Q86X40 367 aaPredicted RBP12.98□□□□□ -0.33
CLSTN3-213ENST00000541953 POLE4Q9NR33 117 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms