RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 SIGLEC11Q96RL6 698 aa9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 SEPHS2Q99611 448 aa9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 WFDC6Q9BQY6 131 aa9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 SSBP3Q9BWW4 388 aaPredicted RBP9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 CHIAQ9BZP6 476 aa9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 PAIP1Q9H074 479 aaKnown RBP9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 WDR55Q9H6Y2 383 aaPredicted RBP9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 EVA1AQ9H8M9 152 aa9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 NANSQ9NR45 359 aa9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 RNF114Q9Y508 228 aa9.74□□□□□ -0.85
CLSTN3-209ENST00000539982 GMNCA6NCL1 334 aa9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 PRORSD1PA6NEY8 169 aa9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 CEACAM18A8MTB9 384 aa9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 CENPBD1B2RD01 187 aa9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 TIMM8AO60220 97 aaPredicted RBP9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 CLPXO76031 633 aa9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 BGNP21810 368 aa9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 POLR2JP52435 117 aaKnown RBP9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 ARHGDIAP52565 204 aa9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 ZNF133P52736 654 aaPredicted RBP9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 RPL15P61313 204 aaKnown RBP9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 CDK6Q00534 326 aa9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 PSG4Q00888 419 aa9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 GABPB1Q06547 395 aaPredicted RBP9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 PSG7Q13046 419 aa9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 C10orf128Q5T292 105 aa9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 ZNF774Q6NX45 483 aa9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 ZNF613Q6PF04 617 aa9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 BRD3OSQ6XYD6 125 aa9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 ZNF620Q6ZNG0 422 aa9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 RFPL4BQ6ZWI9 263 aa9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 ALDH16A1Q8IZ83 802 aa9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 AKR7LQ8NHP1 331 aa9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 GTF2H4Q92759 462 aa9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 DACT3Q96B18 629 aaPredicted RBP9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 FAM71F1Q96KD3 344 aaPredicted RBP9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 MARCH7Q9H992 704 aa9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 ELOVL3Q9HB03 270 aa9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 SLCO1B3Q9NPD5 702 aa9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 MAN2C1Q9NTJ4 1040 aa9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 ZIM2Q9NZV7 527 aa9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 ZNF229Q9UJW7 825 aa9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 SLC13A4Q9UKG4 626 aa9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 PPP1R3CQ9UQK1 317 aa9.73□□□□□ -0.85
CLSTN3-209ENST00000539982 TRPC5OSA6NMA1 111 aa9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 TMEM178BH3BS89 294 aa9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 SURF4O15260 269 aa9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 HDAC3O15379 428 aa9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 CHP2O43745 196 aa9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 FMO6PO60774 539 aa9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 SERPINB7O75635 380 aa9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 TRMUO75648 421 aaKnown RBP9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 VIMP08670 466 aaKnown RBP9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 ASAH2BP0C7U1 165 aa9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 ACADSP16219 412 aa9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 CDAP32320 146 aa9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 GNB2P62879 340 aa9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 SGCAQ16586 387 aa9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 GCNT6Q5T4J0 391 aa9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 TTC33Q6PID6 262 aaPredicted RBP9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 Q6ZR03 302 aa9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 KLBQ86Z14 1044 aa9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 NOXO1Q8NFA2 376 aa9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 OR2Z1Q8NG97 314 aa9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 LINC01006Q8NI28 216 aa9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 NABP1Q96AH0 204 aa9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 PLEKHA8Q96JA3 519 aa9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 C4orf45Q96LM5 186 aa9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 ZNF607Q96SK3 696 aa9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 MCHR1Q99705 422 aa9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 TMEM165Q9HC07 324 aa9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 TCF7L1Q9HCS4 588 aa9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 SDR39U1Q9NRG7 319 aaPredicted RBP9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 ASH2LQ9UBL3 628 aa9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 MIOXQ9UGB7 285 aa9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 IL19Q9UHD0 177 aa9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 UGT2A1Q9Y4X1 527 aa9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 POMT1Q9Y6A1 747 aa9.72□□□□□ -0.85
CLSTN3-209ENST00000539982 A0A1W2PRG6 482 aa9.71□□□□□ -0.86
CLSTN3-209ENST00000539982 BLOC1S5-TXNDC5H3BN57 136 aa9.71□□□□□ -0.86
CLSTN3-209ENST00000539982 IFNL4K9M1U5 179 aa9.71□□□□□ -0.86
CLSTN3-209ENST00000539982 TSPAN15O95858 294 aa9.71□□□□□ -0.86
CLSTN3-209ENST00000539982 MELTFP08582 738 aa9.71□□□□□ -0.86
CLSTN3-209ENST00000539982 RPS2P15880 293 aaKnown RBP9.71□□□□□ -0.86
CLSTN3-209ENST00000539982 HOXB9P17482 250 aaPredicted RBP9.71□□□□□ -0.86
CLSTN3-209ENST00000539982 TUBG1P23258 451 aa9.71□□□□□ -0.86
CLSTN3-209ENST00000539982 PROK1P58294 105 aa9.71□□□□□ -0.86
CLSTN3-209ENST00000539982 ERVK-25P63136 954 aa9.71□□□□□ -0.86
CLSTN3-209ENST00000539982 BST1Q10588 318 aa9.71□□□□□ -0.86
CLSTN3-209ENST00000539982 GPR157Q5UAW9 335 aa9.71□□□□□ -0.86
CLSTN3-209ENST00000539982 FAM27BQ5VT28 67 aa9.71□□□□□ -0.86
CLSTN3-209ENST00000539982 NXNQ6DKJ4 435 aa9.71□□□□□ -0.86
CLSTN3-209ENST00000539982 SLC27A4Q6P1M0 643 aa9.71□□□□□ -0.86
CLSTN3-209ENST00000539982 SLC2A7Q6PXP3 512 aa9.71□□□□□ -0.86
CLSTN3-209ENST00000539982 ARL9Q6T311 187 aa9.71□□□□□ -0.86
CLSTN3-209ENST00000539982 HDDC2Q7Z4H3 204 aa9.71□□□□□ -0.86
CLSTN3-209ENST00000539982 ARMC8Q8IUR7 673 aa9.71□□□□□ -0.86
CLSTN3-209ENST00000539982 FAM110DQ8TAY7 271 aaPredicted RBP9.71□□□□□ -0.86
CLSTN3-209ENST00000539982 ITLN1Q8WWA0 313 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms