RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 POP5Q969H6 163 aaKnown RBP9.91□□□□□ -0.82
RTN3-209ENST00000538995 CCT8L2Q96SF2 557 aa9.91□□□□□ -0.82
RTN3-209ENST00000538995 ZNF416Q9BWM5 594 aa9.91□□□□□ -0.82
RTN3-209ENST00000538995 WNT5BQ9H1J7 359 aa9.91□□□□□ -0.82
RTN3-209ENST00000538995 MUC13Q9H3R2 512 aa9.91□□□□□ -0.82
RTN3-209ENST00000538995 CHODLQ9H9P2 273 aa9.91□□□□□ -0.82
RTN3-209ENST00000538995 NKIRAS2Q9NYR9 191 aa9.91□□□□□ -0.82
RTN3-209ENST00000538995 ACTR3BQ9P1U1 418 aa9.91□□□□□ -0.82
RTN3-209ENST00000538995 EIF3KQ9UBQ5 218 aaKnown RBP9.91□□□□□ -0.82
RTN3-209ENST00000538995 LPAR3Q9UBY5 353 aa9.91□□□□□ -0.82
RTN3-209ENST00000538995 CDC42EP3Q9UKI2 254 aa9.91□□□□□ -0.82
RTN3-209ENST00000538995 ADAM21Q9UKJ8 722 aa9.91□□□□□ -0.82
RTN3-209ENST00000538995 NDRG4Q9ULP0 352 aaKnown RBP9.91□□□□□ -0.82
RTN3-209ENST00000538995 FZR1Q9UM11 496 aa9.91□□□□□ -0.82
RTN3-209ENST00000538995 V9GYQ6 96 aa9.91□□□□□ -0.82
RTN3-209ENST00000538995 LOC100509620A0A075B734 347 aa9.9□□□□□ -0.82
RTN3-209ENST00000538995 C5orf49A4QMS7 147 aa9.9□□□□□ -0.82
RTN3-209ENST00000538995 IMPA2O14732 288 aa9.9□□□□□ -0.82
RTN3-209ENST00000538995 IGHV3-13P01766 116 aa9.9□□□□□ -0.82
RTN3-209ENST00000538995 MT-ND5P03915 603 aa9.9□□□□□ -0.82
RTN3-209ENST00000538995 CTLA4P16410 223 aa9.9□□□□□ -0.82
RTN3-209ENST00000538995 ZNF16P17020 682 aaPredicted RBP9.9□□□□□ -0.82
RTN3-209ENST00000538995 ACHEP22303 614 aa9.9□□□□□ -0.82
RTN3-209ENST00000538995 CHN2P52757 468 aa9.9□□□□□ -0.82
RTN3-209ENST00000538995 FXYD6P3P58550 94 aa9.9□□□□□ -0.82
RTN3-209ENST00000538995 MAD2L1BPQ15013 274 aaPredicted RBP9.9□□□□□ -0.82
RTN3-209ENST00000538995 CHRFAM7AQ494W8 412 aa9.9□□□□□ -0.82
RTN3-209ENST00000538995 ELFN2Q5R3F8 820 aa9.9□□□□□ -0.82
RTN3-209ENST00000538995 PGM2L1Q6PCE3 622 aa9.9□□□□□ -0.82
RTN3-209ENST00000538995 ARL9Q6T311 187 aa9.9□□□□□ -0.82
RTN3-209ENST00000538995 UGT2A3Q6UWM9 527 aa9.9□□□□□ -0.82
RTN3-209ENST00000538995 THSD4Q6ZMP0 1018 aa9.9□□□□□ -0.82
RTN3-209ENST00000538995 FITM2Q8N6M3 262 aa9.9□□□□□ -0.82
RTN3-209ENST00000538995 OR1J1Q8NGS3 322 aa9.9□□□□□ -0.82
RTN3-209ENST00000538995 OR52J3Q8NH60 311 aa9.9□□□□□ -0.82
RTN3-209ENST00000538995 AKR7LQ8NHP1 331 aa9.9□□□□□ -0.82
RTN3-209ENST00000538995 FANK1Q8TC84 345 aa9.9□□□□□ -0.82
RTN3-209ENST00000538995 RDH5Q92781 318 aa9.9□□□□□ -0.82
RTN3-209ENST00000538995 RASD2Q96D21 266 aa9.9□□□□□ -0.82
RTN3-209ENST00000538995 SNX18Q96RF0 628 aa9.9□□□□□ -0.82
RTN3-209ENST00000538995 SYT4Q9H2B2 425 aa9.9□□□□□ -0.82
RTN3-209ENST00000538995 ELOVL3Q9HB03 270 aa9.9□□□□□ -0.82
RTN3-209ENST00000538995 HINT3Q9NQE9 182 aaKnown RBP9.9□□□□□ -0.82
RTN3-209ENST00000538995 TAAR3PQ9P1P4 343 aa9.9□□□□□ -0.82
RTN3-209ENST00000538995 CGGBP1Q9UFW8 167 aaPredicted RBP9.9□□□□□ -0.82
RTN3-209ENST00000538995 ATPIF1Q9UII2 106 aa9.9□□□□□ -0.82
RTN3-209ENST00000538995 C17orf100A8MU93 164 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 ARPC3O15145 178 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 OR10H3O60404 316 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 KHDRBS3O75525 346 aaKnown RBP9.89□□□□□ -0.83
RTN3-209ENST00000538995 KRT36O76013 467 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 CLPTM1O96005 669 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 HPXP02790 462 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 NAT2P11245 290 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 CCNOP22674 350 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 CALB2P22676 271 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 TUBG1P23258 451 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 CRABP1P29762 137 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 GCH1P30793 250 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 RRM2P31350 389 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 SLC6A6P31641 620 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 MSX2P35548 267 aaPredicted RBP9.89□□□□□ -0.83
RTN3-209ENST00000538995 WNT5AP41221 380 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 MAGEA2P43356 314 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 ERVS71-1P61550 626 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 LSM6P62312 80 aaKnown RBP9.89□□□□□ -0.83
RTN3-209ENST00000538995 AQP6Q13520 282 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 ZNF718Q3SXZ3 478 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 FAM209AQ5JX71 171 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 MBNL2Q5VZF2 373 aaKnown RBP9.89□□□□□ -0.83
RTN3-209ENST00000538995 FAM166AQ6J272 317 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 TMEM154Q6P9G4 183 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 DNM1P34Q6PK57 102 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 ZER1Q7Z7L7 766 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 ZDHHC21Q8IVQ6 265 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 GLB1L2Q8IW92 636 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 ZNF101Q8IZC7 436 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 LINC00471Q8N535 108 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 CCDC197Q8NCU1 140 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 ICA1LQ8NDH6 482 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 NSL1Q96IY1 281 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 GPA33Q99795 319 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 OR51B6Q9H340 312 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 TUBG2Q9NRH3 451 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 TMCC3Q9ULS5 477 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 KCNS2Q9ULS6 477 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 IER3IP1Q9Y5U9 82 aa9.89□□□□□ -0.83
RTN3-209ENST00000538995 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.88□□□□□ -0.832e-17■■■■□ 24.5
RTN3-209ENST00000538995 LOC100289279A0A1B0GTE1 492 aa9.88□□□□□ -0.83
RTN3-209ENST00000538995 B2RBV5 119 aa9.88□□□□□ -0.83
RTN3-209ENST00000538995 J3QW42 95 aa9.88□□□□□ -0.83
RTN3-209ENST00000538995 SOCS2O14508 198 aa9.88□□□□□ -0.83
RTN3-209ENST00000538995 SGCEO43556 437 aa9.88□□□□□ -0.83
RTN3-209ENST00000538995 IDH3BO43837 385 aa9.88□□□□□ -0.83
RTN3-209ENST00000538995 DOK2O60496 412 aa9.88□□□□□ -0.83
RTN3-209ENST00000538995 LMX1BO60663 402 aa9.88□□□□□ -0.83
RTN3-209ENST00000538995 SLC16A7O60669 478 aa9.88□□□□□ -0.83
RTN3-209ENST00000538995 LILRA1O75019 489 aa9.88□□□□□ -0.83
RTN3-209ENST00000538995 NCR1O76036 304 aa9.88□□□□□ -0.83
RTN3-209ENST00000538995 IFNA2P01563 188 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms