RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 HIST1H3AP68431 136 aa11.18□□□□□ -0.62
VPS28-216ENST00000533806 PLP2Q04941 152 aa11.18□□□□□ -0.62
VPS28-216ENST00000533806 SNTB2Q13425 540 aaKnown RBP11.18□□□□□ -0.62
VPS28-216ENST00000533806 CLEC12AQ5QGZ9 265 aa11.18□□□□□ -0.62
VPS28-216ENST00000533806 HIST2H3PS2Q5TEC6 136 aa11.18□□□□□ -0.62
VPS28-216ENST00000533806 LEG1Q6P5S2 330 aa11.18□□□□□ -0.62
VPS28-216ENST00000533806 HIST2H3AQ71DI3 136 aa11.18□□□□□ -0.62
VPS28-216ENST00000533806 HS3ST5Q8IZT8 346 aa11.18□□□□□ -0.62
VPS28-216ENST00000533806 OR4Q3Q8NH05 313 aa11.18□□□□□ -0.62
VPS28-216ENST00000533806 AKR7LQ8NHP1 331 aa11.18□□□□□ -0.62
VPS28-216ENST00000533806 FOXN4Q96NZ1 517 aa11.18□□□□□ -0.62
VPS28-216ENST00000533806 RACGAP1Q9H0H5 632 aa11.18□□□□□ -0.62
VPS28-216ENST00000533806 KCNN2Q9H2S1 579 aa11.18□□□□□ -0.62
VPS28-216ENST00000533806 EMC7Q9NPA0 242 aa11.18□□□□□ -0.62
VPS28-216ENST00000533806 PDP1Q9P0J1 537 aaPredicted RBP11.18□□□□□ -0.62
VPS28-216ENST00000533806 IQCMA0A1B0GVH7 501 aa11.17□□□□□ -0.62
VPS28-216ENST00000533806 TIPRLO75663 272 aa11.17□□□□□ -0.62
VPS28-216ENST00000533806 GPANK1O95872 356 aa11.17□□□□□ -0.62
VPS28-216ENST00000533806 TFP02787 698 aa11.17□□□□□ -0.62
VPS28-216ENST00000533806 PRKACGP22612 351 aa11.17□□□□□ -0.62
VPS28-216ENST00000533806 STOMP27105 288 aa11.17□□□□□ -0.62
VPS28-216ENST00000533806 WNT5AP41221 380 aa11.17□□□□□ -0.62
VPS28-216ENST00000533806 GUCA1AP43080 201 aaPredicted RBP11.17□□□□□ -0.62
VPS28-216ENST00000533806 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.17□□□□□ -0.62
VPS28-216ENST00000533806 SLC35F1Q5T1Q4 408 aa11.17□□□□□ -0.62
VPS28-216ENST00000533806 VHLLQ6RSH7 139 aa11.17□□□□□ -0.62
VPS28-216ENST00000533806 JAZF1Q86VZ6 243 aa11.17□□□□□ -0.62
VPS28-216ENST00000533806 CIARTQ8N365 385 aaPredicted RBP11.17□□□□□ -0.62
VPS28-216ENST00000533806 SLC26A10Q8NG04 563 aa11.17□□□□□ -0.62
VPS28-216ENST00000533806 OR52L1Q8NGH7 329 aa11.17□□□□□ -0.62
VPS28-216ENST00000533806 OR52E2Q8NGJ4 325 aa11.17□□□□□ -0.62
VPS28-216ENST00000533806 OR1J2Q8NGS2 313 aa11.17□□□□□ -0.62
VPS28-216ENST00000533806 C11orf40Q8WZ69 217 aa11.17□□□□□ -0.62
VPS28-216ENST00000533806 MRPL24Q96A35 216 aaKnown RBP11.17□□□□□ -0.62
VPS28-216ENST00000533806 NRBF2Q96F24 287 aa11.17□□□□□ -0.62
VPS28-216ENST00000533806 Q96MF0 132 aa11.17□□□□□ -0.62
VPS28-216ENST00000533806 RBM4Q9BWF3 364 aaKnown RBP11.17□□□□□ -0.62
VPS28-216ENST00000533806 TSSK6Q9BXA6 273 aa11.17□□□□□ -0.62
VPS28-216ENST00000533806 MRPL37Q9BZE1 423 aaKnown RBP11.17□□□□□ -0.62
VPS28-216ENST00000533806 NMNAT2Q9BZQ4 307 aa11.17□□□□□ -0.62
VPS28-216ENST00000533806 SRA1Q9HD15 236 aaKnown RBP11.17□□□□□ -0.62
VPS28-216ENST00000533806 CCNB1IP1Q9NPC3 277 aa11.17□□□□□ -0.62
VPS28-216ENST00000533806 BAIAP2Q9UQB8 552 aa11.17□□□□□ -0.62
VPS28-216ENST00000533806 CMAHPQ9Y471 501 aa11.17□□□□□ -0.62
VPS28-216ENST00000533806 SPEF1Q9Y4P9 236 aa11.17□□□□□ -0.62
VPS28-216ENST00000533806 FKBP7Q9Y680 259 aa11.17□□□□□ -0.62
VPS28-216ENST00000533806 NIPBLQ6KC79 2804 aaeCLIP11.16□□□□□ -0.62
VPS28-216ENST00000533806 SETD2Q9BYW2 2564 aaPredicted RBP11.16□□□□□ -0.62
VPS28-216ENST00000533806 GNGT2O14610 69 aa11.16□□□□□ -0.62
VPS28-216ENST00000533806 SOX14O95416 240 aa11.16□□□□□ -0.62
VPS28-216ENST00000533806 F12P00748 615 aaPredicted RBP11.16□□□□□ -0.62
VPS28-216ENST00000533806 RENP00797 406 aa11.16□□□□□ -0.62
VPS28-216ENST00000533806 COX5BP10606 129 aa11.16□□□□□ -0.62
VPS28-216ENST00000533806 BMP4P12644 408 aa11.16□□□□□ -0.62
VPS28-216ENST00000533806 NOS3P29474 1203 aa11.16□□□□□ -0.62
VPS28-216ENST00000533806 PPOXP50336 477 aa11.16□□□□□ -0.62
VPS28-216ENST00000533806 UCP2P55851 309 aa11.16□□□□□ -0.62
VPS28-216ENST00000533806 HSF2Q03933 536 aa11.16□□□□□ -0.62
VPS28-216ENST00000533806 AQP6Q13520 282 aa11.16□□□□□ -0.62
VPS28-216ENST00000533806 RAB35Q15286 201 aa11.16□□□□□ -0.62
VPS28-216ENST00000533806 ATP6AP1Q15904 470 aa11.16□□□□□ -0.62
VPS28-216ENST00000533806 TBC1D28Q2M2D7 210 aa11.16□□□□□ -0.62
VPS28-216ENST00000533806 C1orf146Q5VVC0 180 aa11.16□□□□□ -0.62
VPS28-216ENST00000533806 OTPQ5XKR4 325 aa11.16□□□□□ -0.62
VPS28-216ENST00000533806 ZNF774Q6NX45 483 aa11.16□□□□□ -0.62
VPS28-216ENST00000533806 SHQ1Q6PI26 577 aaKnown RBP11.16□□□□□ -0.62
VPS28-216ENST00000533806 DNM1P34Q6PK57 102 aa11.16□□□□□ -0.62
VPS28-216ENST00000533806 CCDC121Q6ZUS5 278 aa11.16□□□□□ -0.62
VPS28-216ENST00000533806 SLC37A3Q8NCC5 494 aa11.16□□□□□ -0.62
VPS28-216ENST00000533806 SDR9C7Q8NEX9 313 aa11.16□□□□□ -0.62
VPS28-216ENST00000533806 OR2T33Q8NG76 320 aa11.16□□□□□ -0.62
VPS28-216ENST00000533806 ZNRF4Q8WWF5 429 aa11.16□□□□□ -0.62
VPS28-216ENST00000533806 BARX1Q9HBU1 254 aaPredicted RBP11.16□□□□□ -0.62
VPS28-216ENST00000533806 RPRD1BQ9NQG5 326 aaKnown RBP11.16□□□□□ -0.62
VPS28-216ENST00000533806 LHFPL6Q9Y693 200 aa11.16□□□□□ -0.62
VPS28-216ENST00000533806 PMF1-BGLAPU3KQ54 211 aa11.16□□□□□ -0.62
VPS28-216ENST00000533806 RTTNQ86VV8 2226 aa11.16□□□□□ -0.62
VPS28-216ENST00000533806 IGLV3-9A0A075B6K5 115 aa11.15□□□□□ -0.62
VPS28-216ENST00000533806 OR6C6A6NF89 314 aa11.15□□□□□ -0.62
VPS28-216ENST00000533806 TRIM64A6NGJ6 449 aa11.15□□□□□ -0.62
VPS28-216ENST00000533806 TRIM64BA6NI03 449 aa11.15□□□□□ -0.62
VPS28-216ENST00000533806 VSTM5A8MXK1 200 aa11.15□□□□□ -0.62
VPS28-216ENST00000533806 SYNGR3O43761 229 aa11.15□□□□□ -0.62
VPS28-216ENST00000533806 DEAF1O75398 565 aaPredicted RBP11.15□□□□□ -0.62
VPS28-216ENST00000533806 ANXA8P13928 327 aa11.15□□□□□ -0.62
VPS28-216ENST00000533806 ZNF250P15622 560 aa11.15□□□□□ -0.62
VPS28-216ENST00000533806 APLNRP35414 380 aa11.15□□□□□ -0.62
VPS28-216ENST00000533806 GGT2P36268 569 aa11.15□□□□□ -0.62
VPS28-216ENST00000533806 RAD52P43351 418 aa11.15□□□□□ -0.62
VPS28-216ENST00000533806 EFNA4P52798 201 aa11.15□□□□□ -0.62
VPS28-216ENST00000533806 GALK2Q01415 458 aa11.15□□□□□ -0.62
VPS28-216ENST00000533806 GLO1Q04760 184 aa11.15□□□□□ -0.62
VPS28-216ENST00000533806 MEP1BQ16820 701 aa11.15□□□□□ -0.62
VPS28-216ENST00000533806 SLC36A3Q495N2 470 aa11.15□□□□□ -0.62
VPS28-216ENST00000533806 CCDC92Q53HC0 331 aaPredicted RBP11.15□□□□□ -0.62
VPS28-216ENST00000533806 FAHD1Q6P587 224 aa11.15□□□□□ -0.62
VPS28-216ENST00000533806 VASH1Q7L8A9 365 aaPredicted RBP11.15□□□□□ -0.62
VPS28-216ENST00000533806 LRP11Q86VZ4 500 aa11.15□□□□□ -0.62
VPS28-216ENST00000533806 ALDH16A1Q8IZ83 802 aa11.15□□□□□ -0.62
VPS28-216ENST00000533806 ZNF101Q8IZC7 436 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms