RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 ZP3P21754 424 aa5.55□□□□□ -1.52
LSM1-202ENST00000520286 GATA2P23769 480 aaPredicted RBP5.55□□□□□ -1.52
LSM1-202ENST00000520286 FDFT1P37268 417 aa5.55□□□□□ -1.52
LSM1-202ENST00000520286 AQP4P55087 323 aa5.55□□□□□ -1.52
LSM1-202ENST00000520286 SLC1A5Q15758 541 aa5.55□□□□□ -1.52
LSM1-202ENST00000520286 ZNF77Q15935 545 aa5.55□□□□□ -1.52
LSM1-202ENST00000520286 NDUFA5Q16718 116 aa5.55□□□□□ -1.52
LSM1-202ENST00000520286 NSUN5P1Q3KNT7 163 aa5.55□□□□□ -1.52
LSM1-202ENST00000520286 SMUG1Q53HV7 270 aa5.55□□□□□ -1.52
LSM1-202ENST00000520286 TCTEX1D4Q5JR98 221 aa5.55□□□□□ -1.52
LSM1-202ENST00000520286 TMEM31Q5JXX7 168 aa5.55□□□□□ -1.52
LSM1-202ENST00000520286 NUDCD3Q8IVD9 361 aa5.55□□□□□ -1.52
LSM1-202ENST00000520286 OR4K14Q8NGD5 310 aa5.55□□□□□ -1.52
LSM1-202ENST00000520286 TYMSOSQ8TAI1 123 aa5.55□□□□□ -1.52
LSM1-202ENST00000520286 ZNF75CPQ92670 426 aaPredicted RBP5.55□□□□□ -1.52
LSM1-202ENST00000520286 FGF11Q92914 225 aa5.55□□□□□ -1.52
LSM1-202ENST00000520286 SNF8Q96H20 258 aa5.55□□□□□ -1.52
LSM1-202ENST00000520286 PAXXQ9BUH6 204 aa5.55□□□□□ -1.52
LSM1-202ENST00000520286 Q9H3A6 140 aa5.55□□□□□ -1.52
LSM1-202ENST00000520286 TPK1Q9H3S4 243 aa5.55□□□□□ -1.52
LSM1-202ENST00000520286 ISG20L2Q9H9L3 353 aaKnown RBP5.55□□□□□ -1.52
LSM1-202ENST00000520286 HOXC10Q9NYD6 342 aa5.55□□□□□ -1.52
LSM1-202ENST00000520286 KLHL21Q9UJP4 597 aa5.55□□□□□ -1.52
LSM1-202ENST00000520286 RAB26Q9ULW5 256 aa5.55□□□□□ -1.52
LSM1-202ENST00000520286 KCNIP3Q9Y2W7 256 aa5.55□□□□□ -1.52
LSM1-202ENST00000520286 CSDC2Q9Y534 153 aaKnown RBP5.55□□□□□ -1.52
LSM1-202ENST00000520286 LRRK1Q38SD2 2015 aa5.55□□□□□ -1.52
LSM1-202ENST00000520286 RAI1Q7Z5J4 1906 aaPredicted RBP5.54□□□□□ -1.52
LSM1-202ENST00000520286 TANC1Q9C0D5 1861 aa5.54□□□□□ -1.52
LSM1-202ENST00000520286 A0A1W2PQ72 361 aa5.54□□□□□ -1.52
LSM1-202ENST00000520286 TUBAL3A6NHL2 446 aa5.54□□□□□ -1.52
LSM1-202ENST00000520286 CYTH3O43739 400 aa5.54□□□□□ -1.52
LSM1-202ENST00000520286 TNFAIP8O95379 198 aa5.54□□□□□ -1.52
LSM1-202ENST00000520286 TMEM50AO95807 157 aa5.54□□□□□ -1.52
LSM1-202ENST00000520286 IL12AP29459 219 aa5.54□□□□□ -1.52
LSM1-202ENST00000520286 NUP107P57740 925 aa5.54□□□□□ -1.52
LSM1-202ENST00000520286 NAA20P61599 178 aa5.54□□□□□ -1.52
LSM1-202ENST00000520286 SCRN3Q0VDG4 424 aa5.54□□□□□ -1.52
LSM1-202ENST00000520286 TCP10Q12799 353 aa5.54□□□□□ -1.52
LSM1-202ENST00000520286 OR5I1Q13606 314 aa5.54□□□□□ -1.52
LSM1-202ENST00000520286 XKR7Q5GH72 579 aa5.54□□□□□ -1.52
LSM1-202ENST00000520286 SAMD4BQ5PRF9 694 aaKnown RBP5.54□□□□□ -1.52
LSM1-202ENST00000520286 LRRC66Q68CR7 880 aa5.54□□□□□ -1.52
LSM1-202ENST00000520286 SPOPLQ6IQ16 392 aa5.54□□□□□ -1.52
LSM1-202ENST00000520286 WDR74Q6RFH5 385 aaPredicted RBP5.54□□□□□ -1.52
LSM1-202ENST00000520286 GDPD3Q7L5L3 318 aa5.54□□□□□ -1.52
LSM1-202ENST00000520286 MOB1BQ7L9L4 216 aa5.54□□□□□ -1.52
LSM1-202ENST00000520286 SLC13A5Q86YT5 568 aaPredicted RBP5.54□□□□□ -1.52
LSM1-202ENST00000520286 BORCS5Q969J3 196 aa5.54□□□□□ -1.52
LSM1-202ENST00000520286 TM4SF19Q96DZ7 209 aa5.54□□□□□ -1.52
LSM1-202ENST00000520286 CTRCQ99895 268 aa5.54□□□□□ -1.52
LSM1-202ENST00000520286 TRABDQ9H4I3 376 aa5.54□□□□□ -1.52
LSM1-202ENST00000520286 DDX18Q9NVP1 670 aaKnown RBP5.54□□□□□ -1.52
LSM1-202ENST00000520286 GIN1Q9NXP7 522 aa5.54□□□□□ -1.52
LSM1-202ENST00000520286 PSMC3IPQ9P2W1 217 aaPredicted RBP5.54□□□□□ -1.52
LSM1-202ENST00000520286 RSL24D1Q9UHA3 163 aaKnown RBP5.54□□□□□ -1.52
LSM1-202ENST00000520286 BAZ2AQ9UIF9 1905 aaKnown RBP5.54□□□□□ -1.52
LSM1-202ENST00000520286 ZNFX1Q9P2E3 1918 aaKnown RBP5.53□□□□□ -1.52
LSM1-202ENST00000520286 IGHV7-81A0A0B4J1V7 117 aa5.53□□□□□ -1.52
LSM1-202ENST00000520286 CCDC182A6NF36 153 aa5.53□□□□□ -1.52
LSM1-202ENST00000520286 TMEM114B3SHH9 223 aa5.53□□□□□ -1.52
LSM1-202ENST00000520286 K7N7A8 449 aa5.53□□□□□ -1.52
LSM1-202ENST00000520286 AQP9O43315 295 aa5.53□□□□□ -1.52
LSM1-202ENST00000520286 LYPLA1O75608 230 aaPredicted RBP5.53□□□□□ -1.52
LSM1-202ENST00000520286 SULT1C4O75897 302 aa5.53□□□□□ -1.52
LSM1-202ENST00000520286 CGAP01215 116 aa5.53□□□□□ -1.52
LSM1-202ENST00000520286 AQP1P29972 269 aa5.53□□□□□ -1.52
LSM1-202ENST00000520286 TMED10P49755 219 aaKnown RBP5.53□□□□□ -1.52
LSM1-202ENST00000520286 TMED2Q15363 201 aa5.53□□□□□ -1.52
LSM1-202ENST00000520286 KCTD19Q17RG1 926 aaPredicted RBP5.53□□□□□ -1.52
LSM1-202ENST00000520286 ZNF829Q3KNS6 432 aaPredicted RBP5.53□□□□□ -1.52
LSM1-202ENST00000520286 RAET1LQ5VY80 246 aa5.53□□□□□ -1.52
LSM1-202ENST00000520286 METTL21CQ5VZV1 264 aa5.53□□□□□ -1.52
LSM1-202ENST00000520286 PAMR1Q6UXH9 720 aa5.53□□□□□ -1.52
LSM1-202ENST00000520286 C19orf35Q6ZS72 473 aa5.53□□□□□ -1.52
LSM1-202ENST00000520286 PSTKQ8IV42 348 aaKnown RBP5.53□□□□□ -1.52
LSM1-202ENST00000520286 FTMTQ8N4E7 242 aa5.53□□□□□ -1.52
LSM1-202ENST00000520286 UBL4BQ8N7F7 174 aa5.53□□□□□ -1.52
LSM1-202ENST00000520286 TPRX1Q8N7U7 411 aa5.53□□□□□ -1.52
LSM1-202ENST00000520286 BBOF1Q8ND07 529 aa5.53□□□□□ -1.52
LSM1-202ENST00000520286 SETD7Q8WTS6 366 aaKnown RBP5.53□□□□□ -1.52
LSM1-202ENST00000520286 DNAJC19Q96DA6 116 aa5.53□□□□□ -1.52
LSM1-202ENST00000520286 ANKRD36BP1Q96IX9 119 aa5.53□□□□□ -1.52
LSM1-202ENST00000520286 MRPL45Q9BRJ2 306 aaKnown RBP5.53□□□□□ -1.52
LSM1-202ENST00000520286 Q9H521 79 aa5.53□□□□□ -1.52
LSM1-202ENST00000520286 FOLH1BQ9HBA9 442 aa5.53□□□□□ -1.52
LSM1-202ENST00000520286 PARVBQ9HBI1 364 aa5.53□□□□□ -1.52
LSM1-202ENST00000520286 NEK6Q9HC98 313 aa5.53□□□□□ -1.52
LSM1-202ENST00000520286 ABCD2Q9UBJ2 740 aa5.53□□□□□ -1.52
LSM1-202ENST00000520286 DCDC2Q9UHG0 476 aa5.53□□□□□ -1.52
LSM1-202ENST00000520286 GNPTGQ9UJJ9 305 aa5.53□□□□□ -1.52
LSM1-202ENST00000520286 MUC3AQ02505 3323 aa5.52□□□□□ -1.53
LSM1-202ENST00000520286 OR5B21A6NL26 309 aa5.52□□□□□ -1.53
LSM1-202ENST00000520286 SPECC1L-ADORA2AF8WAN1 911 aa5.52□□□□□ -1.53
LSM1-202ENST00000520286 H0YJX3 145 aa5.52□□□□□ -1.53
LSM1-202ENST00000520286 MBTPS2O43462 519 aa5.52□□□□□ -1.53
LSM1-202ENST00000520286 LGI1O95970 557 aa5.52□□□□□ -1.53
LSM1-202ENST00000520286 KITLGP21583 273 aa5.52□□□□□ -1.53
LSM1-202ENST00000520286 HMOX2P30519 316 aa5.52□□□□□ -1.53
LSM1-202ENST00000520286 SHMT2P34897 504 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms