RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 MFGE8Q08431 387 aaPredicted RBP13.3□□□□□ -0.28
NUP54-217ENST00000514987 IL11RAQ14626 422 aa13.3□□□□□ -0.28
NUP54-217ENST00000514987 PLPPR5Q32ZL2 321 aa13.3□□□□□ -0.28
NUP54-217ENST00000514987 C2orf76Q3KRA6 126 aa13.3□□□□□ -0.28
NUP54-217ENST00000514987 THEM4Q5T1C6 240 aa13.3□□□□□ -0.28
NUP54-217ENST00000514987 PMS2CLQ68D20 193 aa13.3□□□□□ -0.28
NUP54-217ENST00000514987 ARSKQ6UWY0 536 aa13.3□□□□□ -0.28
NUP54-217ENST00000514987 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.3□□□□□ -0.28
NUP54-217ENST00000514987 PIAS4Q8N2W9 510 aaPredicted RBP13.3□□□□□ -0.28
NUP54-217ENST00000514987 SPICQ8N5J4 248 aa13.3□□□□□ -0.28
NUP54-217ENST00000514987 NKAIN3Q8N8D7 197 aa13.3□□□□□ -0.28
NUP54-217ENST00000514987 OR51D1Q8NGF3 324 aa13.3□□□□□ -0.28
NUP54-217ENST00000514987 ST7LQ8TDW4 575 aa13.3□□□□□ -0.28
NUP54-217ENST00000514987 SLC25A43Q8WUT9 341 aaPredicted RBP13.3□□□□□ -0.28
NUP54-217ENST00000514987 ARL5BQ96KC2 179 aa13.3□□□□□ -0.28
NUP54-217ENST00000514987 FOXN4Q96NZ1 517 aa13.3□□□□□ -0.28
NUP54-217ENST00000514987 SPSB2Q99619 263 aa13.3□□□□□ -0.28
NUP54-217ENST00000514987 ZNF436Q9C0F3 470 aaPredicted RBP13.3□□□□□ -0.28
NUP54-217ENST00000514987 RYDENQ9NUL5 291 aaKnown RBP13.3□□□□□ -0.28
NUP54-217ENST00000514987 MRPL15Q9P015 296 aaKnown RBP13.3□□□□□ -0.28
NUP54-217ENST00000514987 OR52A1Q9UKL2 312 aa13.3□□□□□ -0.28
NUP54-217ENST00000514987 VDAC3Q9Y277 283 aa13.3□□□□□ -0.28
NUP54-217ENST00000514987 PCNX3Q9H6A9 2034 aa13.3□□□□□ -0.28
NUP54-217ENST00000514987 A0A1W2PQ72 361 aa13.29□□□□□ -0.28
NUP54-217ENST00000514987 C2orf72A6NCS6 295 aa13.29□□□□□ -0.28
NUP54-217ENST00000514987 AKR7A2O43488 359 aa13.29□□□□□ -0.28
NUP54-217ENST00000514987 ITGA5P08648 1049 aa13.29□□□□□ -0.28
NUP54-217ENST00000514987 H2BFMP0C1H6 154 aa13.29□□□□□ -0.28
NUP54-217ENST00000514987 CXCL3P19876 107 aa13.29□□□□□ -0.28
NUP54-217ENST00000514987 HTR2CP28335 458 aa13.29□□□□□ -0.28
NUP54-217ENST00000514987 PRSS3P35030 304 aa13.29□□□□□ -0.28
NUP54-217ENST00000514987 EIF1P41567 113 aaKnown RBP13.29□□□□□ -0.28
NUP54-217ENST00000514987 VEGFCP49767 419 aa13.29□□□□□ -0.28
NUP54-217ENST00000514987 MMP16P51512 607 aa13.29□□□□□ -0.28
NUP54-217ENST00000514987 GNG2P59768 71 aa13.29□□□□□ -0.28
NUP54-217ENST00000514987 RPS15P62841 145 aaKnown RBP13.29□□□□□ -0.28
NUP54-217ENST00000514987 SNTA1Q13424 505 aa13.29□□□□□ -0.28
NUP54-217ENST00000514987 HLA-BQ31612 363 aa13.29□□□□□ -0.28
NUP54-217ENST00000514987 STPG1Q5TH74 334 aa13.29□□□□□ -0.28
NUP54-217ENST00000514987 C3orf33Q6P1S2 294 aa13.29□□□□□ -0.28
NUP54-217ENST00000514987 LYPD8Q6UX82 237 aa13.29□□□□□ -0.28
NUP54-217ENST00000514987 GLDNQ6ZMI3 551 aaPredicted RBP13.29□□□□□ -0.28
NUP54-217ENST00000514987 DCXRQ7Z4W1 244 aa13.29□□□□□ -0.28
NUP54-217ENST00000514987 WDR5BQ86VZ2 330 aa13.29□□□□□ -0.28
NUP54-217ENST00000514987 OR13C3Q8NGS6 347 aa13.29□□□□□ -0.28
NUP54-217ENST00000514987 PTX4Q96A99 478 aa13.29□□□□□ -0.28
NUP54-217ENST00000514987 SLC25A44Q96H78 314 aaPredicted RBP13.29□□□□□ -0.28
NUP54-217ENST00000514987 DEFB126Q9BYW3 111 aa13.29□□□□□ -0.28
NUP54-217ENST00000514987 OR10A4Q9H209 315 aa13.29□□□□□ -0.28
NUP54-217ENST00000514987 SLCO5A1Q9H2Y9 848 aa13.29□□□□□ -0.28
NUP54-217ENST00000514987 SCPEP1Q9HB40 452 aa13.29□□□□□ -0.28
NUP54-217ENST00000514987 PRMT8Q9NR22 394 aaPredicted RBP13.29□□□□□ -0.28
NUP54-217ENST00000514987 DLL4Q9NR61 685 aa13.29□□□□□ -0.28
NUP54-217ENST00000514987 GPN3Q9UHW5 284 aaPredicted RBP13.29□□□□□ -0.28
NUP54-217ENST00000514987 EMC9Q9Y3B6 208 aa13.29□□□□□ -0.28
NUP54-217ENST00000514987 B3GALT1Q9Y5Z6 326 aa13.29□□□□□ -0.28
NUP54-217ENST00000514987 ARID1BQ8NFD5 2236 aaPredicted RBP13.29□□□□□ -0.28
NUP54-217ENST00000514987 ANKRD34BA5PLL1 514 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 H0YC42 278 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 MEN1O00255 615 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 TP53I11O14683 189 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 ARPC1BO15143 372 aaKnown RBP13.28□□□□□ -0.28
NUP54-217ENST00000514987 CREBL2O60519 120 aaPredicted RBP13.28□□□□□ -0.28
NUP54-217ENST00000514987 AKAIN1P0CW23 69 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 IL11P20809 199 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 C4BPBP20851 252 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 ADH6P28332 368 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 ACTBP60709 375 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 ACTG1P63261 375 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 RBMS2Q15434 407 aaKnown RBP13.28□□□□□ -0.28
NUP54-217ENST00000514987 FAM69BQ5VUD6 431 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 MRPL14Q6P1L8 145 aaKnown RBP13.28□□□□□ -0.28
NUP54-217ENST00000514987 KLHL24Q6TFL4 600 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 SEZ6L2Q6UXD5 910 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 RHOUQ7L0Q8 258 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 UEVLDQ8IX04 471 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 KDM8Q8N371 416 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 OR1J4Q8NGS1 313 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 RNF133Q8WVZ7 376 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 GCDHQ92947 438 aaPredicted RBP13.28□□□□□ -0.28
NUP54-217ENST00000514987 PMEPA1Q969W9 287 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 SLC25A28Q96A46 364 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 PTGES2Q9H7Z7 377 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 G6PC2Q9NQR9 355 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 NPDC1Q9NQX5 325 aaPredicted RBP13.28□□□□□ -0.28
NUP54-217ENST00000514987 ZNF107Q9UII5 783 aaPredicted RBP13.28□□□□□ -0.28
NUP54-217ENST00000514987 TRAV18A0A075B6X5 111 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 A0A087WZY1 265 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 LOC102723996A0A087X1L8 192 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 TMEM269A0A1B0GVZ9 245 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 CIB4A0PJX0 185 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 OR2J2O76002 312 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 MPZL1O95297 269 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 ALDOBP05062 364 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 TPOP07202 933 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 TMIGD3P0DMS9 266 aaPredicted RBP13.28□□□□□ -0.28
NUP54-217ENST00000514987 GABRA1P14867 456 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 DNASE1P24855 282 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 PTGDSP41222 190 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 DUSP3P51452 185 aaPredicted RBP13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms