RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 VTCN1Q7Z7D3 282 aa5.02□□□□□ -1.61
NUP54-215ENST00000514313 CAMK2N1Q7Z7J9 78 aa5.02□□□□□ -1.61
NUP54-215ENST00000514313 STPG2Q8N412 459 aa5.02□□□□□ -1.61
NUP54-215ENST00000514313 DNAJC1Q96KC8 554 aaKnown RBP5.02□□□□□ -1.61
NUP54-215ENST00000514313 PIGUQ9H490 435 aa5.02□□□□□ -1.61
NUP54-215ENST00000514313 TDRD3Q9H7E2 651 aaKnown RBP5.02□□□□□ -1.61
NUP54-215ENST00000514313 PDFQ9HBH1 243 aa5.02□□□□□ -1.61
NUP54-215ENST00000514313 NUFIP1Q9UHK0 495 aaKnown RBP5.02□□□□□ -1.61
NUP54-215ENST00000514313 PRSS37A4D1T9 235 aa5.01□□□□□ -1.61
NUP54-215ENST00000514313 ZBTB5O15062 677 aa5.01□□□□□ -1.61
NUP54-215ENST00000514313 HBE1P02100 147 aa5.01□□□□□ -1.61
NUP54-215ENST00000514313 MSR1P21757 451 aa5.01□□□□□ -1.61
NUP54-215ENST00000514313 TNFSF9P41273 254 aa5.01□□□□□ -1.61
NUP54-215ENST00000514313 NCF4Q15080 339 aa5.01□□□□□ -1.61
NUP54-215ENST00000514313 PTPN20Q4JDL3 420 aa5.01□□□□□ -1.61
NUP54-215ENST00000514313 ZNF493Q6ZR52 646 aa5.01□□□□□ -1.61
NUP54-215ENST00000514313 H2AFVQ71UI9 128 aa5.01□□□□□ -1.61
NUP54-215ENST00000514313 STRADAQ7RTN6 431 aa5.01□□□□□ -1.61
NUP54-215ENST00000514313 LINC00523Q86TU6 105 aa5.01□□□□□ -1.61
NUP54-215ENST00000514313 C11orf53Q8IXP5 236 aa5.01□□□□□ -1.61
NUP54-215ENST00000514313 CMTM8Q8IZV2 173 aa5.01□□□□□ -1.61
NUP54-215ENST00000514313 OR6X1Q8NH79 312 aa5.01□□□□□ -1.61
NUP54-215ENST00000514313 CA5BP1Q8WTZ4 195 aa5.01□□□□□ -1.61
NUP54-215ENST00000514313 ASB9Q96DX5 294 aa5.01□□□□□ -1.61
NUP54-215ENST00000514313 CLSTN2Q9H4D0 955 aa5.01□□□□□ -1.61
NUP54-215ENST00000514313 SAR1BQ9Y6B6 198 aa5.01□□□□□ -1.61
NUP54-215ENST00000514313 CENPJQ9HC77 1338 aaPredicted RBP5□□□□□ -1.61
NUP54-215ENST00000514313 MAPK8IP3Q9UPT6 1336 aa5□□□□□ -1.61
NUP54-215ENST00000514313 A0A1W2PRD5 423 aa5□□□□□ -1.61
NUP54-215ENST00000514313 TMEM120BA0PK00 339 aa5□□□□□ -1.61
NUP54-215ENST00000514313 ZNF99A8MXY4 864 aaPredicted RBP5□□□□□ -1.61
NUP54-215ENST00000514313 RAD51CO43502 376 aa5□□□□□ -1.61
NUP54-215ENST00000514313 FLOT1O75955 427 aa5□□□□□ -1.61
NUP54-215ENST00000514313 IGLV2-23P01705 113 aa5□□□□□ -1.61
NUP54-215ENST00000514313 GNAO1P09471 354 aa5□□□□□ -1.61
NUP54-215ENST00000514313 KRTAP1-4P0C5Y4 121 aa5□□□□□ -1.61
NUP54-215ENST00000514313 UBTFL6P0CB48 400 aaPredicted RBP5□□□□□ -1.61
NUP54-215ENST00000514313 CRISP3P54108 245 aa5□□□□□ -1.61
NUP54-215ENST00000514313 CARD18P57730 90 aa5□□□□□ -1.61
NUP54-215ENST00000514313 PRPSAP1Q14558 356 aa5□□□□□ -1.61
NUP54-215ENST00000514313 TRMT5Q32P41 509 aaKnown RBP5□□□□□ -1.61
NUP54-215ENST00000514313 TEX43Q6ZNM6 134 aa5□□□□□ -1.61
NUP54-215ENST00000514313 OR10J6PQ8NGY7 276 aa5□□□□□ -1.61
NUP54-215ENST00000514313 TMEM158Q8WZ71 300 aa5□□□□□ -1.61
NUP54-215ENST00000514313 MICU1Q9BPX6 476 aa5□□□□□ -1.61
NUP54-215ENST00000514313 FBXO44Q9H4M3 255 aa5□□□□□ -1.61
NUP54-215ENST00000514313 TMEM9BQ9NQ34 198 aa5□□□□□ -1.61
NUP54-215ENST00000514313 CLN6Q9NWW5 311 aa5□□□□□ -1.61
NUP54-215ENST00000514313 MROH5Q6ZUA9 1318 aa4.99□□□□□ -1.61
NUP54-215ENST00000514313 ZNF318Q5VUA4 2279 aa4.99□□□□□ -1.61
NUP54-215ENST00000514313 SCN2AQ99250 2005 aa4.99□□□□□ -1.61
NUP54-215ENST00000514313 PLAC8L1A1L4L8 177 aa4.99□□□□□ -1.61
NUP54-215ENST00000514313 PANO1I0J062 215 aa4.99□□□□□ -1.61
NUP54-215ENST00000514313 ZNF701M0R085 212 aaPredicted RBP4.99□□□□□ -1.61
NUP54-215ENST00000514313 AQP8O94778 261 aa4.99□□□□□ -1.61
NUP54-215ENST00000514313 LSM8O95777 96 aaKnown RBP4.99□□□□□ -1.61
NUP54-215ENST00000514313 CRYGCP07315 174 aa4.99□□□□□ -1.61
NUP54-215ENST00000514313 OR5H8P0DN80 308 aa4.99□□□□□ -1.61
NUP54-215ENST00000514313 GGT1P19440 569 aa4.99□□□□□ -1.61
NUP54-215ENST00000514313 WNT4P56705 351 aa4.99□□□□□ -1.61
NUP54-215ENST00000514313 NKAIN1Q4KMZ8 207 aa4.99□□□□□ -1.61
NUP54-215ENST00000514313 UBE2UQ5VVX9 321 aa4.99□□□□□ -1.61
NUP54-215ENST00000514313 LYPD2Q6UXB3 125 aa4.99□□□□□ -1.61
NUP54-215ENST00000514313 CBLN2Q8IUK8 224 aa4.99□□□□□ -1.61
NUP54-215ENST00000514313 LINC01555Q8NAE3 123 aa4.99□□□□□ -1.61
NUP54-215ENST00000514313 INO80EQ8NBZ0 244 aaPredicted RBP4.99□□□□□ -1.61
NUP54-215ENST00000514313 CD300LFQ8TDQ1 290 aa4.99□□□□□ -1.61
NUP54-215ENST00000514313 ZIM3Q96PE6 472 aa4.99□□□□□ -1.61
NUP54-215ENST00000514313 DMAP1Q9NPF5 467 aaPredicted RBP4.99□□□□□ -1.61
NUP54-215ENST00000514313 ABCB10Q9NRK6 738 aa4.99□□□□□ -1.61
NUP54-215ENST00000514313 PRG3Q9Y2Y8 225 aaPredicted RBP4.99□□□□□ -1.61
NUP54-215ENST00000514313 YARS2Q9Y2Z4 477 aaKnown RBP4.99□□□□□ -1.61
NUP54-215ENST00000514313 KCNE3Q9Y6H6 103 aa4.99□□□□□ -1.61
NUP54-215ENST00000514313 NCBP2LA6PVI3 153 aaKnown RBP4.98□□□□□ -1.61
NUP54-215ENST00000514313 SERPINE3A8MV23 424 aa4.98□□□□□ -1.61
NUP54-215ENST00000514313 KRT16P08779 473 aa4.98□□□□□ -1.61
NUP54-215ENST00000514313 ZDHHC11BP0C7U3 371 aa4.98□□□□□ -1.61
NUP54-215ENST00000514313 RFC3P40938 356 aa4.98□□□□□ -1.61
NUP54-215ENST00000514313 NMUP48645 174 aa4.98□□□□□ -1.61
NUP54-215ENST00000514313 CSNK1DP48730 415 aa4.98□□□□□ -1.61
NUP54-215ENST00000514313 GABRA6Q16445 453 aa4.98□□□□□ -1.61
NUP54-215ENST00000514313 TMEM183BQ1AE95 376 aa4.98□□□□□ -1.61
NUP54-215ENST00000514313 RPEL1Q2QD12 228 aa4.98□□□□□ -1.61
NUP54-215ENST00000514313 LCE3CQ5T5A8 94 aa4.98□□□□□ -1.61
NUP54-215ENST00000514313 TMEM183AQ8IXX5 376 aa4.98□□□□□ -1.61
NUP54-215ENST00000514313 OR4S2Q8NH73 311 aa4.98□□□□□ -1.61
NUP54-215ENST00000514313 LKAAEAR1Q8TD35 194 aa4.98□□□□□ -1.61
NUP54-215ENST00000514313 NAT6Q93015 286 aa4.98□□□□□ -1.61
NUP54-215ENST00000514313 RNF185Q96GF1 192 aa4.98□□□□□ -1.61
NUP54-215ENST00000514313 C9orf72Q96LT7 481 aa4.98□□□□□ -1.61
NUP54-215ENST00000514313 HDHD3Q9BSH5 251 aaPredicted RBP4.98□□□□□ -1.61
NUP54-215ENST00000514313 CDC42EP4Q9H3Q1 356 aaKnown RBP4.98□□□□□ -1.61
NUP54-215ENST00000514313 MYOZ2Q9NPC6 264 aa4.98□□□□□ -1.61
NUP54-215ENST00000514313 KIF27Q86VH2 1401 aa4.97□□□□□ -1.61
NUP54-215ENST00000514313 TNIKQ9UKE5 1360 aa4.97□□□□□ -1.61
NUP54-215ENST00000514313 IGLV1-36A0A0B4J1U3 117 aa4.97□□□□□ -1.61
NUP54-215ENST00000514313 TSPAN11A1L157 253 aa4.97□□□□□ -1.61
NUP54-215ENST00000514313 A6NDX4 124 aa4.97□□□□□ -1.61
NUP54-215ENST00000514313 H7C0C1 242 aa4.97□□□□□ -1.61
NUP54-215ENST00000514313 CD5LO43866 347 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms