RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 ARRB2P32121 409 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 RAD52P43351 418 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 GALR1P47211 349 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 CSNK1DP48730 415 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 HMGN2P46Q86SG4 172 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 PPP1R1CQ8WVI7 109 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 DCBLD2Q96PD2 775 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 IL17FQ96PD4 163 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 GLIS2Q9BZE0 524 aaPredicted RBP10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 SMDT1Q9H4I9 107 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 TMEM231Q9H6L2 316 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 OR5V1Q9UGF6 321 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 SH3BGRL2Q9UJC5 107 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 FEZF1A0PJY2 475 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 PRAMEF25A6NGN4 478 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 PGA3P0DJD8 388 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 CPMP14384 443 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 FOXA1P55317 472 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 HERVK_113P61574 105 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 TMEM128Q5BJH2 165 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 PRAMEF5Q5TYX0 476 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 PRAMEF6Q5VXH4 476 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 DHRS13Q6UX07 377 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 CCDC190Q86UF4 302 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 LRP11Q86VZ4 500 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 OR4C16Q8NGL9 310 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 MCHR2Q969V1 340 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 OBP2BQ9NPH6 170 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 KLF15Q9UIH9 416 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 GABRQQ9UN88 632 aa10.33□□□□□ -0.76
LIMCH1-217ENST00000512946 FAM74A7A6NL05 159 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 C17orf105B2RV13 164 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 SEMA7AO75326 666 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 SCO1O75880 301 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 HTR5AP47898 357 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 PAX5Q02548 391 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 POU3F1Q03052 451 aaPredicted RBP10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 C21orf62-AS1Q17RA5 79 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 PKDCCQ504Y2 493 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 C2orf27AQ580R0 203 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 ABHD17BQ5VST6 288 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 C15orf39Q6ZRI6 1047 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 ANGPTL5Q86XS5 388 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 GJC3Q8NFK1 279 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 OR52R1Q8NGF1 315 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 OR8D4Q8NGM9 314 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 NPAS1Q99742 590 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 NMES1Q9C002 83 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 LRIT1Q9P2V4 623 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 NAT8BQ9UHF3 227 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 SETD1BQ9UPS6 1966 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 A0A0J9YY10 115 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 DNPH1O43598 174 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 NRASP01111 189 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 HRASP01112 189 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 KRASP01116 189 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 IGHEP01854 428 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 F2RP25116 425 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 GPR12P47775 334 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 NOGQ13253 232 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 ZNF595Q8IYB9 648 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 C11orf42Q8N5U0 333 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 TMEM37Q8WXS4 190 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 SPHK2Q9NRA0 654 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 PIGLQ9Y2B2 252 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 ERVFC1-1P60608 527 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 DMWDQ09019 674 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 FAM74A3Q4VXF1 159 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 SOWAHCQ53LP3 525 aaPredicted RBP10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 LY6G5CQ5SRR4 150 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 TSEN54Q7Z6J9 526 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 CLEC14AQ86T13 490 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 ISG20Q96AZ6 181 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 ABCD4O14678 606 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 AKR7A2O43488 359 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 AREGP15514 252 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 EIF1P41567 113 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 PCP4P48539 62 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 GABREP78334 506 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 DGCR2P98153 550 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 LMAN2Q12907 356 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 CDONQ4KMG0 1287 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 MRPL2Q5T653 305 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 ARL6IP6Q8N6S5 226 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 KIAA1958Q8N8K9 716 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 ZFP62Q8NB50 900 aaPredicted RBP10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 ANGPTL4Q9BY76 406 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 NARFLQ9H6Q4 476 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 FZD1Q9UP38 647 aa10.32□□□□□ -0.76
LIMCH1-217ENST00000512946 SERTM2A0A1B0GWG4 89 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 OR5AL1P0C617 328 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 CTSAP10619 480 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 ALOX5APP20292 161 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 ERHP84090 104 aaKnown RBP10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 EXT1Q16394 746 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 PHLDA2Q53GA4 152 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 MRM1Q6IN84 353 aaKnown RBP10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 GAS2L1Q99501 681 aaPredicted RBP10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 RSG1Q9BU20 258 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 CHST6Q9GZX3 395 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms