RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 TLX1NBP0CAT3 122 aa2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 OR5H8P0DN80 308 aa2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 ZNF32P17041 273 aa2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 DCKP27707 260 aa2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 NAMPTP43490 491 aa2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 CSNK1EP49674 416 aaKnown RBP2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 EIF3EP60228 445 aaKnown RBP2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 LIPEQ05469 1076 aa2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 PTGES3Q15185 160 aaKnown RBP2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 OR7A5Q15622 319 aa2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 TFDP3Q5H9I0 405 aa2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 DNAJC24Q6P3W2 148 aa2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 TTC23LQ6PF05 361 aa2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 DUX4L9Q6RFH8 374 aaPredicted RBP2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 ARL9Q6T311 187 aa2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 EIF3MQ7L2H7 374 aaKnown RBP2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 CMC1Q7Z7K0 106 aa2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 NOXO1Q8NFA2 376 aa2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 TSEN15Q8WW01 171 aaKnown RBP2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 CAPSLQ8WWF8 208 aa2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 ECHDC3Q96DC8 303 aa2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 OR2A5Q96R48 311 aa2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 CHAC1Q9BUX1 264 aa2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 NEUROG2Q9H2A3 272 aa2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 GEMIN7Q9H840 131 aaKnown RBP2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 TMEM165Q9HC07 324 aa2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 LYARQ9NX58 379 aaKnown RBP2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 PTTG3PQ9NZH4 202 aa2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 UVRAGQ9P2Y5 699 aa2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 KCNE3Q9Y6H6 103 aa2.52□□□□□ -2.01
HMGB1P28-201ENST00000507778 PRRC2AP48634 2157 aaKnown RBP2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 GTF3C1Q12789 2109 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 IGKV2D-24A0A075B6R9 120 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 A0A1W2PP18 115 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 HUS1O60921 280 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 FKBP6O75344 327 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 CLDN11O75508 207 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 SLC25A14O95258 325 aaPredicted RBP2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 HLA-DPB1P04440 258 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 ZNF823P16415 610 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 PGAM1P18669 254 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 BCKDHBP21953 392 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 GALP22466 123 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 WARSP23381 471 aaKnown RBP2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 UQCRFS1P47985 274 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 MRPL19P49406 292 aaKnown RBP2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 RND2P52198 227 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 ZNF138P52744 262 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 VSX2P58304 361 aaPredicted RBP2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 PFN3P60673 137 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 RAP1AP62834 184 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 ARG2P78540 354 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 EBI3Q14213 229 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 RGNQ15493 299 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 ZNF691Q5VV52 312 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 PRSS58Q8IYP2 241 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 PGAM4Q8N0Y7 254 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 GABRG1Q8N1C3 465 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 CYB561D1Q8N8Q1 229 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 LYPD6BQ8NI32 183 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 EEF1AKMT3Q96AZ1 226 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 C8orf44Q96CB5 159 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 SEH1LQ96EE3 360 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 C11orf70Q9BRQ4 267 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 RPP21Q9H633 154 aaKnown RBP2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 EXO5Q9H790 373 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 PATZ1Q9HBE1 687 aaKnown RBP2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 TMEM9BQ9NQ34 198 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 MTCH1Q9NZJ7 389 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 SLC17A4Q9Y2C5 497 aa2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 PHF3Q92576 2039 aaKnown RBP2.51□□□□□ -2.01
HMGB1P28-201ENST00000507778 MROH7-TTC4A0A0A0MT08 1334 aa2.5□□□□□ -2.01
HMGB1P28-201ENST00000507778 A0A1B0GVX0 72 aa2.5□□□□□ -2.01
HMGB1P28-201ENST00000507778 SMKR1H3BMG3 65 aa2.5□□□□□ -2.01
HMGB1P28-201ENST00000507778 BCHEP06276 602 aa2.5□□□□□ -2.01
HMGB1P28-201ENST00000507778 SERPINE2P07093 398 aa2.5□□□□□ -2.01
HMGB1P28-201ENST00000507778 ERCC1P07992 297 aaPredicted RBP2.5□□□□□ -2.01
HMGB1P28-201ENST00000507778 CEACAM3P40198 252 aa2.5□□□□□ -2.01
HMGB1P28-201ENST00000507778 SLAQ13239 276 aa2.5□□□□□ -2.01
HMGB1P28-201ENST00000507778 EIF4EBP2Q13542 120 aaPredicted RBP2.5□□□□□ -2.01
HMGB1P28-201ENST00000507778 TRAM2Q15035 370 aa2.5□□□□□ -2.01
HMGB1P28-201ENST00000507778 PSMD5Q16401 504 aa2.5□□□□□ -2.01
HMGB1P28-201ENST00000507778 PGGHGQ32M88 737 aa2.5□□□□□ -2.01
HMGB1P28-201ENST00000507778 HSDL1Q3SXM5 330 aa2.5□□□□□ -2.01
HMGB1P28-201ENST00000507778 TMEM220Q6QAJ8 160 aa2.5□□□□□ -2.01
HMGB1P28-201ENST00000507778 MBOAT1Q6ZNC8 495 aa2.5□□□□□ -2.01
HMGB1P28-201ENST00000507778 SSX9Q7RTT3 188 aa2.5□□□□□ -2.01
HMGB1P28-201ENST00000507778 BIVMQ86UB2 503 aa2.5□□□□□ -2.01
HMGB1P28-201ENST00000507778 ZFP41Q8N8Y5 198 aa2.5□□□□□ -2.01
HMGB1P28-201ENST00000507778 C15orf56Q8N910 161 aa2.5□□□□□ -2.01
HMGB1P28-201ENST00000507778 OR5W2Q8NH69 310 aa2.5□□□□□ -2.01
HMGB1P28-201ENST00000507778 ABHD3Q8WU67 409 aa2.5□□□□□ -2.01
HMGB1P28-201ENST00000507778 NRGNQ92686 78 aa2.5□□□□□ -2.01
HMGB1P28-201ENST00000507778 TM4SF18Q96CE8 201 aa2.5□□□□□ -2.01
HMGB1P28-201ENST00000507778 ZNF681Q96N22 645 aa2.5□□□□□ -2.01
HMGB1P28-201ENST00000507778 MICU1Q9BPX6 476 aa2.5□□□□□ -2.01
HMGB1P28-201ENST00000507778 BPIFA3Q9BQP9 254 aa2.5□□□□□ -2.01
HMGB1P28-201ENST00000507778 NDFIP1Q9BT67 221 aa2.5□□□□□ -2.01
HMGB1P28-201ENST00000507778 C20orf96Q9NUD7 363 aaPredicted RBP2.5□□□□□ -2.01
HMGB1P28-201ENST00000507778 CTSFQ9UBX1 484 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms