RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 C7orf66A4D0T2 115 aa1.9□□□□□ -2.11
VPS50-219ENST00000495039 LRRIQ3A6PVS8 624 aaPredicted RBP1.9□□□□□ -2.11
VPS50-219ENST00000495039 AIM2O14862 343 aa1.9□□□□□ -2.11
VPS50-219ENST00000495039 RAD51BO15315 384 aa1.9□□□□□ -2.11
VPS50-219ENST00000495039 RP2O75695 350 aa1.9□□□□□ -2.11
VPS50-219ENST00000495039 UBTFL6P0CB48 400 aaPredicted RBP1.9□□□□□ -2.11
VPS50-219ENST00000495039 ZNF43P17038 809 aa1.9□□□□□ -2.11
VPS50-219ENST00000495039 WARSP23381 471 aaKnown RBP1.9□□□□□ -2.11
VPS50-219ENST00000495039 F2RP25116 425 aa1.9□□□□□ -2.11
VPS50-219ENST00000495039 CALRP27797 417 aaKnown RBP1.9□□□□□ -2.11
VPS50-219ENST00000495039 AQP2P41181 271 aa1.9□□□□□ -2.11
VPS50-219ENST00000495039 NAA10P41227 235 aaPredicted RBP1.9□□□□□ -2.11
VPS50-219ENST00000495039 NSG1P42857 185 aa1.9□□□□□ -2.11
VPS50-219ENST00000495039 TMED10P49755 219 aaKnown RBP1.9□□□□□ -2.11
VPS50-219ENST00000495039 ZNF138P52744 262 aa1.9□□□□□ -2.11
VPS50-219ENST00000495039 ADARB1P78563 741 aaKnown RBP1.9□□□□□ -2.11
VPS50-219ENST00000495039 HMGN5P82970 282 aaKnown RBP1.9□□□□□ -2.11
VPS50-219ENST00000495039 MXD1Q05195 221 aa1.9□□□□□ -2.11
VPS50-219ENST00000495039 SF3A2Q15428 464 aaKnown RBP1.9□□□□□ -2.11
VPS50-219ENST00000495039 KPRPQ5T749 579 aaPredicted RBP1.9□□□□□ -2.11
VPS50-219ENST00000495039 PRMT9Q6P2P2 845 aa1.9□□□□□ -2.11
VPS50-219ENST00000495039 CEMP1Q6PRD7 247 aaPredicted RBP1.9□□□□□ -2.11
VPS50-219ENST00000495039 NTM-AS1Q6ZSK4 140 aa1.9□□□□□ -2.11
VPS50-219ENST00000495039 CDR2LQ86X02 465 aaPredicted RBP1.9□□□□□ -2.11
VPS50-219ENST00000495039 MMAAQ8IVH4 418 aaKnown RBP1.9□□□□□ -2.11
VPS50-219ENST00000495039 FBXL13Q8NEE6 735 aa1.9□□□□□ -2.11
VPS50-219ENST00000495039 AKR7LQ8NHP1 331 aa1.9□□□□□ -2.11
VPS50-219ENST00000495039 ZNF461Q8TAF7 563 aa1.9□□□□□ -2.11
VPS50-219ENST00000495039 RBMXL1Q96E39 390 aaKnown RBP1.9□□□□□ -2.11
VPS50-219ENST00000495039 ZNF578Q96N58 590 aaPredicted RBP1.9□□□□□ -2.11
VPS50-219ENST00000495039 CENPKQ9BS16 269 aa1.9□□□□□ -2.11
VPS50-219ENST00000495039 UBE2ZQ9H832 354 aaPredicted RBP1.9□□□□□ -2.11
VPS50-219ENST00000495039 ST3GAL6Q9Y274 331 aa1.9□□□□□ -2.11
VPS50-219ENST00000495039 RFNGQ9Y644 331 aa1.9□□□□□ -2.11
VPS50-219ENST00000495039 CAMTA1Q9Y6Y1 1673 aa1.9□□□□□ -2.11
VPS50-219ENST00000495039 GLYATL1P3A0A0U1RQE8 302 aa1.89□□□□□ -2.11
VPS50-219ENST00000495039 TMEM223A0PJW6 202 aa1.89□□□□□ -2.11
VPS50-219ENST00000495039 COLCA2A8K830 154 aa1.89□□□□□ -2.11
VPS50-219ENST00000495039 SGK1O00141 431 aa1.89□□□□□ -2.11
VPS50-219ENST00000495039 RAB29O14966 203 aa1.89□□□□□ -2.11
VPS50-219ENST00000495039 PALMO75781 387 aa1.89□□□□□ -2.11
VPS50-219ENST00000495039 CLPXO76031 633 aa1.89□□□□□ -2.11
VPS50-219ENST00000495039 RCBTB2O95199 551 aa1.89□□□□□ -2.11
VPS50-219ENST00000495039 CRYGBP07316 175 aa1.89□□□□□ -2.11
VPS50-219ENST00000495039 OR56A5P0C7T3 313 aa1.89□□□□□ -2.11
VPS50-219ENST00000495039 TROVE2P10155 538 aaKnown RBP eCLIP1.89□□□□□ -2.11
VPS50-219ENST00000495039 ACLYP53396 1101 aa1.89□□□□□ -2.11
VPS50-219ENST00000495039 VSX2P58304 361 aaPredicted RBP1.89□□□□□ -2.11
VPS50-219ENST00000495039 SLC25A11Q02978 314 aaKnown RBP1.89□□□□□ -2.11
VPS50-219ENST00000495039 LOXL1Q08397 574 aaPredicted RBP1.89□□□□□ -2.11
VPS50-219ENST00000495039 PON2Q15165 354 aa1.89□□□□□ -2.11
VPS50-219ENST00000495039 IRF4Q15306 451 aa1.89□□□□□ -2.11
VPS50-219ENST00000495039 COX19Q49B96 90 aa1.89□□□□□ -2.11
VPS50-219ENST00000495039 METTL21CQ5VZV1 264 aa1.89□□□□□ -2.11
VPS50-219ENST00000495039 ZNF880Q6PDB4 577 aa1.89□□□□□ -2.11
VPS50-219ENST00000495039 SLC25A34Q6PIV7 304 aa1.89□□□□□ -2.11
VPS50-219ENST00000495039 PLET1Q6UQ28 207 aa1.89□□□□□ -2.11
VPS50-219ENST00000495039 SASS6Q6UVJ0 657 aa1.89□□□□□ -2.11
VPS50-219ENST00000495039 SHISA6Q6ZSJ9 500 aa1.89□□□□□ -2.11
VPS50-219ENST00000495039 TAS2R42Q7RTR8 314 aa1.89□□□□□ -2.11
VPS50-219ENST00000495039 BHLHA15Q7RTS1 189 aaPredicted RBP1.89□□□□□ -2.11
VPS50-219ENST00000495039 HMGN2P46Q86SG4 172 aa1.89□□□□□ -2.11
VPS50-219ENST00000495039 WDR86Q86TI4 376 aa1.89□□□□□ -2.11
VPS50-219ENST00000495039 FAM228AQ86W67 206 aa1.89□□□□□ -2.11
VPS50-219ENST00000495039 SLC22A9Q8IVM8 553 aa1.89□□□□□ -2.11
VPS50-219ENST00000495039 OR56B2PQ8NGI1 322 aa1.89□□□□□ -2.11
VPS50-219ENST00000495039 COQ8AQ8NI60 647 aa1.89□□□□□ -2.11
VPS50-219ENST00000495039 RGP1Q92546 391 aaPredicted RBP1.89□□□□□ -2.11
VPS50-219ENST00000495039 OR10C1Q96KK4 312 aa1.89□□□□□ -2.11
VPS50-219ENST00000495039 RNF157Q96PX1 679 aa1.89□□□□□ -2.11
VPS50-219ENST00000495039 SLC29A1Q99808 456 aa1.89□□□□□ -2.11
VPS50-219ENST00000495039 SAV1Q9H4B6 383 aaPredicted RBP1.89□□□□□ -2.11
VPS50-219ENST00000495039 DDX19AQ9NUU7 478 aaKnown RBP1.89□□□□□ -2.11
VPS50-219ENST00000495039 UXTQ9UBK9 157 aaPredicted RBP1.89□□□□□ -2.11
VPS50-219ENST00000495039 GGA2Q9UJY4 613 aa1.89□□□□□ -2.11
VPS50-219ENST00000495039 HPCAL4Q9UM19 191 aa1.89□□□□□ -2.11
VPS50-219ENST00000495039 HEATR9A2RTY3 570 aa1.88□□□□□ -2.11
VPS50-219ENST00000495039 SMCO3A2RU48 225 aa1.88□□□□□ -2.11
VPS50-219ENST00000495039 SMCO2A6NFE2 343 aa1.88□□□□□ -2.11
VPS50-219ENST00000495039 IGLV3-19P01714 112 aa1.88□□□□□ -2.11
VPS50-219ENST00000495039 SERPINA5P05154 406 aa1.88□□□□□ -2.11
VPS50-219ENST00000495039 ANXA5P08758 320 aa1.88□□□□□ -2.11
VPS50-219ENST00000495039 UQCRFS1P1P0C7P4 283 aa1.88□□□□□ -2.11
VPS50-219ENST00000495039 LINC00869P0C866 280 aa1.88□□□□□ -2.11
VPS50-219ENST00000495039 OR5H8P0DN80 308 aa1.88□□□□□ -2.11
VPS50-219ENST00000495039 DTYMKP23919 212 aa1.88□□□□□ -2.11
VPS50-219ENST00000495039 CEACAM3P40198 252 aa1.88□□□□□ -2.11
VPS50-219ENST00000495039 TNNT2P45379 298 aaPredicted RBP1.88□□□□□ -2.11
VPS50-219ENST00000495039 UBE2NP61088 152 aaKnown RBP1.88□□□□□ -2.11
VPS50-219ENST00000495039 SNRNP35Q16560 246 aaKnown RBP1.88□□□□□ -2.11
VPS50-219ENST00000495039 ORMDL2Q53FV1 153 aa1.88□□□□□ -2.11
VPS50-219ENST00000495039 SLC8B1Q6J4K2 584 aa1.88□□□□□ -2.11
VPS50-219ENST00000495039 FBXW12Q6X9E4 464 aa1.88□□□□□ -2.11
VPS50-219ENST00000495039 CERS6Q6ZMG9 384 aa1.88□□□□□ -2.11
VPS50-219ENST00000495039 NEGR1Q7Z3B1 354 aa1.88□□□□□ -2.11
VPS50-219ENST00000495039 CALHM1Q8IU99 346 aa1.88□□□□□ -2.11
VPS50-219ENST00000495039 LGI3Q8N145 548 aa1.88□□□□□ -2.11
VPS50-219ENST00000495039 METTL13Q8N6R0 699 aa1.88□□□□□ -2.11
VPS50-219ENST00000495039 OR5B3Q8NH48 314 aa1.88□□□□□ -2.11
VPS50-219ENST00000495039 C15orf40Q8WUR7 153 aa1.88□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms