RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 ZNF774Q6NX45 483 aa10.48□□□□□ -0.73
CPSF3-204ENST00000489403 FOXL2NBQ6ZUU3 175 aa10.48□□□□□ -0.73
CPSF3-204ENST00000489403 IGFN1Q86VF2 1251 aa10.48□□□□□ -0.73
CPSF3-204ENST00000489403 C1orf174Q8IYL3 243 aa10.48□□□□□ -0.73
CPSF3-204ENST00000489403 OR8J3Q8NGG0 315 aa10.48□□□□□ -0.73
CPSF3-204ENST00000489403 ST7LQ8TDW4 575 aa10.48□□□□□ -0.73
CPSF3-204ENST00000489403 C4orf45Q96LM5 186 aa10.48□□□□□ -0.73
CPSF3-204ENST00000489403 MAGEB18Q96M61 343 aa10.48□□□□□ -0.73
CPSF3-204ENST00000489403 ALG12Q9BV10 488 aa10.48□□□□□ -0.73
CPSF3-204ENST00000489403 MSL2Q9HCI7 577 aa10.48□□□□□ -0.73
CPSF3-204ENST00000489403 ZDHHC8Q9ULC8 765 aa10.48□□□□□ -0.73
CPSF3-204ENST00000489403 PPIAL4AQ9Y536 164 aa10.48□□□□□ -0.73
CPSF3-204ENST00000489403 NPTNQ9Y639 398 aa10.48□□□□□ -0.73
CPSF3-204ENST00000489403 PPIAL4EA0A075B759 164 aa10.47□□□□□ -0.73
CPSF3-204ENST00000489403 PPIAL4CA0A0B4J2A2 164 aa10.47□□□□□ -0.73
CPSF3-204ENST00000489403 PPIAL4DF5H284 164 aa10.47□□□□□ -0.73
CPSF3-204ENST00000489403 EDF1O60869 148 aaKnown RBP10.47□□□□□ -0.73
CPSF3-204ENST00000489403 FOXH1O75593 365 aa10.47□□□□□ -0.73
CPSF3-204ENST00000489403 SCG5P05408 212 aa10.47□□□□□ -0.73
CPSF3-204ENST00000489403 PPIAL4FP0DN26 164 aa10.47□□□□□ -0.73
CPSF3-204ENST00000489403 IFI30P13284 250 aa10.47□□□□□ -0.73
CPSF3-204ENST00000489403 FUT4P22083 530 aa10.47□□□□□ -0.73
CPSF3-204ENST00000489403 CTXN1P60606 82 aa10.47□□□□□ -0.73
CPSF3-204ENST00000489403 TNFAIP6P98066 277 aaPredicted RBP10.47□□□□□ -0.73
CPSF3-204ENST00000489403 CYLC2Q14093 348 aaPredicted RBP10.47□□□□□ -0.73
CPSF3-204ENST00000489403 TUSC1Q2TAM9 212 aa10.47□□□□□ -0.73
CPSF3-204ENST00000489403 LRRC23Q53EV4 343 aaPredicted RBP10.47□□□□□ -0.73
CPSF3-204ENST00000489403 ZMAT1Q5H9K5 638 aa10.47□□□□□ -0.73
CPSF3-204ENST00000489403 MTX3Q5HYI7 312 aa10.47□□□□□ -0.73
CPSF3-204ENST00000489403 ALDH16A1Q8IZ83 802 aa10.47□□□□□ -0.73
CPSF3-204ENST00000489403 LRRC75AQ8NAA5 344 aa10.47□□□□□ -0.73
CPSF3-204ENST00000489403 DEFB108BQ8NET1 73 aa10.47□□□□□ -0.73
CPSF3-204ENST00000489403 FNDC8Q8TC99 324 aa10.47□□□□□ -0.73
CPSF3-204ENST00000489403 LRRC58Q96CX6 371 aa10.47□□□□□ -0.73
CPSF3-204ENST00000489403 BPIFA2Q96DR5 249 aa10.47□□□□□ -0.73
CPSF3-204ENST00000489403 ZNF583Q96ND8 569 aa10.47□□□□□ -0.73
CPSF3-204ENST00000489403 RBP7Q96R05 134 aa10.47□□□□□ -0.73
CPSF3-204ENST00000489403 DIRC2Q96SL1 478 aa10.47□□□□□ -0.73
CPSF3-204ENST00000489403 SH3GL1Q99961 368 aa10.47□□□□□ -0.73
CPSF3-204ENST00000489403 ECSITQ9BQ95 431 aa10.47□□□□□ -0.73
CPSF3-204ENST00000489403 POFUT1Q9H488 388 aa10.47□□□□□ -0.73
CPSF3-204ENST00000489403 ELOVL3Q9HB03 270 aa10.47□□□□□ -0.73
CPSF3-204ENST00000489403 NTN4Q9HB63 628 aa10.47□□□□□ -0.73
CPSF3-204ENST00000489403 MMP26Q9NRE1 261 aa10.47□□□□□ -0.73
CPSF3-204ENST00000489403 A4GNTQ9UNA3 340 aa10.47□□□□□ -0.73
CPSF3-204ENST00000489403 TIMM10BQ9Y5J6 103 aa10.47□□□□□ -0.73
CPSF3-204ENST00000489403 A0A0G2JND7 137 aa10.46□□□□□ -0.73
CPSF3-204ENST00000489403 A0A1W2PPL8 197 aa10.46□□□□□ -0.73
CPSF3-204ENST00000489403 TIMM8AO60220 97 aaPredicted RBP10.46□□□□□ -0.73
CPSF3-204ENST00000489403 MSR1P21757 451 aa10.46□□□□□ -0.73
CPSF3-204ENST00000489403 FPR2P25090 351 aa10.46□□□□□ -0.73
CPSF3-204ENST00000489403 ARHGDIAP52565 204 aa10.46□□□□□ -0.73
CPSF3-204ENST00000489403 PCBD1P61457 104 aa10.46□□□□□ -0.73
CPSF3-204ENST00000489403 ST3GAL3Q11203 375 aa10.46□□□□□ -0.73
CPSF3-204ENST00000489403 PSG7Q13046 419 aa10.46□□□□□ -0.73
CPSF3-204ENST00000489403 CDK5R2Q13319 367 aa10.46□□□□□ -0.73
CPSF3-204ENST00000489403 FHL1Q13642 323 aa10.46□□□□□ -0.73
CPSF3-204ENST00000489403 METTL21CQ5VZV1 264 aa10.46□□□□□ -0.73
CPSF3-204ENST00000489403 FAM205BPQ63HN1 556 aa10.46□□□□□ -0.73
CPSF3-204ENST00000489403 ERICH5Q6P6B1 374 aa10.46□□□□□ -0.73
CPSF3-204ENST00000489403 TREML1Q86YW5 311 aa10.46□□□□□ -0.73
CPSF3-204ENST00000489403 MICU2Q8IYU8 434 aa10.46□□□□□ -0.73
CPSF3-204ENST00000489403 ZNF283Q8N7M2 679 aa10.46□□□□□ -0.73
CPSF3-204ENST00000489403 POP5Q969H6 163 aaKnown RBP10.46□□□□□ -0.73
CPSF3-204ENST00000489403 PRRC1Q96M27 445 aa10.46□□□□□ -0.73
CPSF3-204ENST00000489403 DCLRE1CQ96SD1 692 aaKnown RBP10.46□□□□□ -0.73
CPSF3-204ENST00000489403 SIKE1Q9BRV8 207 aa10.46□□□□□ -0.73
CPSF3-204ENST00000489403 DDX28Q9NUL7 540 aaKnown RBP10.46□□□□□ -0.73
CPSF3-204ENST00000489403 TMEM106BQ9NUM4 274 aa10.46□□□□□ -0.73
CPSF3-204ENST00000489403 PURGQ9UJV8 347 aaKnown RBP10.46□□□□□ -0.73
CPSF3-204ENST00000489403 PCDHGB1Q9Y5G3 927 aa10.46□□□□□ -0.73
CPSF3-204ENST00000489403 TRRAPQ9Y4A5 3859 aa10.45□□□□□ -0.74
CPSF3-204ENST00000489403 TRAV27A0A087WT01 109 aa10.45□□□□□ -0.74
CPSF3-204ENST00000489403 FAM220BPB1ANY3 271 aa10.45□□□□□ -0.74
CPSF3-204ENST00000489403 TRAPPC2LH3BP13 241 aa10.45□□□□□ -0.74
CPSF3-204ENST00000489403 H7C1C5 153 aa10.45□□□□□ -0.74
CPSF3-204ENST00000489403 ABHD16AO95870 558 aa10.45□□□□□ -0.74
CPSF3-204ENST00000489403 IFNA14P01570 189 aa10.45□□□□□ -0.74
CPSF3-204ENST00000489403 SBK2P0C263 348 aa10.45□□□□□ -0.74
CPSF3-204ENST00000489403 HKR1P10072 659 aa10.45□□□□□ -0.74
CPSF3-204ENST00000489403 KDELR2P33947 212 aa10.45□□□□□ -0.74
CPSF3-204ENST00000489403 SEC61A1P61619 476 aaKnown RBP10.45□□□□□ -0.74
CPSF3-204ENST00000489403 LCN6P62502 163 aa10.45□□□□□ -0.74
CPSF3-204ENST00000489403 TMEM155Q4W5P6 130 aa10.45□□□□□ -0.74
CPSF3-204ENST00000489403 CYBRD1Q53TN4 286 aa10.45□□□□□ -0.74
CPSF3-204ENST00000489403 ARMCX4Q5H9R4 360 aa10.45□□□□□ -0.74
CPSF3-204ENST00000489403 KLF17Q5JT82 389 aaPredicted RBP10.45□□□□□ -0.74
CPSF3-204ENST00000489403 ARL9Q6T311 187 aa10.45□□□□□ -0.74
CPSF3-204ENST00000489403 Q6ZR03 302 aa10.45□□□□□ -0.74
CPSF3-204ENST00000489403 SYT9Q86SS6 491 aa10.45□□□□□ -0.74
CPSF3-204ENST00000489403 SIGLECL1Q8N7X8 197 aa10.45□□□□□ -0.74
CPSF3-204ENST00000489403 NPEPL1Q8NDH3 523 aa10.45□□□□□ -0.74
CPSF3-204ENST00000489403 OR51A7Q8NH64 312 aa10.45□□□□□ -0.74
CPSF3-204ENST00000489403 C10orf82Q8WW14 230 aa10.45□□□□□ -0.74
CPSF3-204ENST00000489403 TPD52L3Q96J77 140 aa10.45□□□□□ -0.74
CPSF3-204ENST00000489403 SAMD8Q96LT4 415 aa10.45□□□□□ -0.74
CPSF3-204ENST00000489403 ZNF747Q9BV97 191 aa10.45□□□□□ -0.74
CPSF3-204ENST00000489403 TMEM120AQ9BXJ8 343 aa10.45□□□□□ -0.74
CPSF3-204ENST00000489403 PATZ1Q9HBE1 687 aaKnown RBP10.45□□□□□ -0.74
CPSF3-204ENST00000489403 POLE4Q9NR33 117 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms