RNA–Protein interactions for RNA: ENST00000487689.1

UBR3-211, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 3

Gene UBR3, Length 668 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-211ENST00000487689 VAMP3Q15836 100 aa2.72□□□□□ -1.97
UBR3-211ENST00000487689 ECSCRQ19T08 205 aa2.72□□□□□ -1.97
UBR3-211ENST00000487689 LRRK1Q38SD2 2015 aa2.72□□□□□ -1.97
UBR3-211ENST00000487689 VPS26BQ4G0F5 336 aa2.72□□□□□ -1.97
UBR3-211ENST00000487689 FAM74A3Q4VXF1 159 aa2.72□□□□□ -1.97
UBR3-211ENST00000487689 SPANXN4Q5MJ08 99 aa2.72□□□□□ -1.97
UBR3-211ENST00000487689 TCHHL1Q5QJ38 904 aaPredicted RBP2.72□□□□□ -1.97
UBR3-211ENST00000487689 AP1ARQ63HQ0 302 aa2.72□□□□□ -1.97
UBR3-211ENST00000487689 ATRAIDQ6UW56 229 aa2.72□□□□□ -1.97
UBR3-211ENST00000487689 LANCL3Q6ZV70 420 aa2.72□□□□□ -1.97
UBR3-211ENST00000487689 Q6ZVQ6 151 aa2.72□□□□□ -1.97
UBR3-211ENST00000487689 TRIM69Q86WT6 500 aa2.72□□□□□ -1.97
UBR3-211ENST00000487689 ERI1Q8IV48 349 aaKnown RBP2.72□□□□□ -1.97
UBR3-211ENST00000487689 FNDC5Q8NAU1 212 aa2.72□□□□□ -1.97
UBR3-211ENST00000487689 SETD7Q8WTS6 366 aaKnown RBP2.72□□□□□ -1.97
UBR3-211ENST00000487689 CCDC12Q8WUD4 166 aaPredicted RBP2.72□□□□□ -1.97
UBR3-211ENST00000487689 C17orf50Q8WW18 174 aa2.72□□□□□ -1.97
UBR3-211ENST00000487689 DLX4Q92988 240 aaPredicted RBP2.72□□□□□ -1.97
UBR3-211ENST00000487689 C8orf44Q96CB5 159 aa2.72□□□□□ -1.97
UBR3-211ENST00000487689 CYTH2Q99418 400 aa2.72□□□□□ -1.97
UBR3-211ENST00000487689 SLC6A7Q99884 636 aa2.72□□□□□ -1.97
UBR3-211ENST00000487689 P2RY13Q9BPV8 354 aa2.72□□□□□ -1.97
UBR3-211ENST00000487689 C19orf43Q9BQ61 176 aa2.72□□□□□ -1.97
UBR3-211ENST00000487689 PAPOLGQ9BWT3 736 aaKnown RBP2.72□□□□□ -1.97
UBR3-211ENST00000487689 TM6SF2Q9BZW4 377 aa2.72□□□□□ -1.97
UBR3-211ENST00000487689 NXF5Q9H1B4 397 aaKnown RBP2.72□□□□□ -1.97
UBR3-211ENST00000487689 ANKRD19PQ9H560 264 aa2.72□□□□□ -1.97
UBR3-211ENST00000487689 FNDC4Q9H6D8 234 aaPredicted RBP2.72□□□□□ -1.97
UBR3-211ENST00000487689 WDR41Q9HAD4 459 aa2.72□□□□□ -1.97
UBR3-211ENST00000487689 CCNB1IP1Q9NPC3 277 aa2.72□□□□□ -1.97
UBR3-211ENST00000487689 IL1RAPQ9NPH3 570 aa2.72□□□□□ -1.97
UBR3-211ENST00000487689 ASCL3Q9NQ33 180 aa2.72□□□□□ -1.97
UBR3-211ENST00000487689 DYRK4Q9NR20 520 aa2.72□□□□□ -1.97
UBR3-211ENST00000487689 SLC17A5Q9NRA2 495 aa2.72□□□□□ -1.97
UBR3-211ENST00000487689 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP2.72□□□□□ -1.97
UBR3-211ENST00000487689 RGS18Q9NS28 235 aa2.72□□□□□ -1.97
UBR3-211ENST00000487689 IL20Q9NYY1 176 aa2.72□□□□□ -1.97
UBR3-211ENST00000487689 MTRF1LQ9UGC7 380 aaKnown RBP2.72□□□□□ -1.97
UBR3-211ENST00000487689 SLC7A8Q9UHI5 535 aa2.72□□□□□ -1.97
UBR3-211ENST00000487689 EXOSC1Q9Y3B2 195 aaKnown RBP2.72□□□□□ -1.97
UBR3-211ENST00000487689 ALG6Q9Y672 507 aa2.72□□□□□ -1.97
UBR3-211ENST00000487689 THADAQ6YHU6 1953 aa2.72□□□□□ -1.97
UBR3-211ENST00000487689 TNRC6BQ9UPQ9 1833 aaKnown RBP2.72□□□□□ -1.97
UBR3-211ENST00000487689 IGSF9BQ9UPX0 1349 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 A0A0A6YYD4 124 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 KBTBD11-OT1A0A1B0GTJ5 212 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 IQCF5A8MTL0 148 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 SERPINE3A8MV23 424 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 G3V4G9 280 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 CLOCKO15516 846 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 SRPX2O60687 465 aaPredicted RBP2.71□□□□□ -1.98
UBR3-211ENST00000487689 HCN1O60741 890 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 SHOX2O60902 331 aaPredicted RBP2.71□□□□□ -1.98
UBR3-211ENST00000487689 CBR3O75828 277 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 OR2J3O76001 311 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 NOL4O94818 638 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 CDK14O94921 469 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 DIRAS1O95057 198 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 TMEM50AO95807 157 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 IGSF6O95976 241 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 KRT7P08729 469 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 CCL2P13500 99 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 CD1EP15812 388 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 GTF2E2P29084 291 aaKnown RBP2.71□□□□□ -1.98
UBR3-211ENST00000487689 PRDX3P30048 256 aaKnown RBP2.71□□□□□ -1.98
UBR3-211ENST00000487689 HNRNPH3P31942 346 aaKnown RBP2.71□□□□□ -1.98
UBR3-211ENST00000487689 P2RY2P41231 377 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 RFX3P48380 749 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 ERVPABLB-1P60509 514 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 RPL27P61353 136 aaKnown RBP2.71□□□□□ -1.98
UBR3-211ENST00000487689 CTAG1AP78358 180 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 RAD51Q06609 339 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 RIPPLY1Q0D2K3 151 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 KLRB1Q12918 225 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 EIF2B1Q14232 305 aaKnown RBP2.71□□□□□ -1.98
UBR3-211ENST00000487689 GPR176Q14439 515 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 GRB7Q14451 532 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 ITIH4Q14624 930 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 PON2Q15165 354 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 HSDL1Q3SXM5 330 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 SLC22A6Q4U2R8 563 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 XKR4Q5GH76 650 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 NHLRC3Q5JS37 347 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 DCST2Q5T1A1 773 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 HES3Q5TGS1 186 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 ACSM5Q6NUN0 579 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 BTNL3Q6UXE8 466 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 APTXQ7Z2E3 356 aaKnown RBP2.71□□□□□ -1.98
UBR3-211ENST00000487689 HSD11B1LQ7Z5J1 315 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 RALGPS2Q86X27 583 aaPredicted RBP2.71□□□□□ -1.98
UBR3-211ENST00000487689 CARM1Q86X55 608 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 MMAAQ8IVH4 418 aaKnown RBP2.71□□□□□ -1.98
UBR3-211ENST00000487689 NKAIN4Q8IVV8 208 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 SLC35F2Q8IXU6 374 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 DND1Q8IYX4 353 aaKnown RBP2.71□□□□□ -1.98
UBR3-211ENST00000487689 C15orf54Q8N8G6 183 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 DNAAF3Q8N9W5 541 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 ZSCAN4Q8NAM6 433 aaPredicted RBP2.71□□□□□ -1.98
UBR3-211ENST00000487689 TMEM104Q8NE00 496 aa2.71□□□□□ -1.98
UBR3-211ENST00000487689 OR9G4Q8NGQ1 327 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms