RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 SLC30A7Q8NEW0 376 aa12□□□□□ -0.49
USP40-214ENST00000483519 OR4K17Q8NGC6 315 aa12□□□□□ -0.49
USP40-214ENST00000483519 RXFP4Q8TDU9 374 aa12□□□□□ -0.49
USP40-214ENST00000483519 C2CD4CQ8TF44 421 aa12□□□□□ -0.49
USP40-214ENST00000483519 MITD1Q8WV92 249 aa12□□□□□ -0.49
USP40-214ENST00000483519 C3orf49Q96BT1 292 aa12□□□□□ -0.49
USP40-214ENST00000483519 CCNL2Q96S94 520 aaPredicted RBP12□□□□□ -0.49
USP40-214ENST00000483519 ZNF587Q96SQ5 575 aaPredicted RBP12□□□□□ -0.49
USP40-214ENST00000483519 INTS14Q96SY0 518 aa12□□□□□ -0.49
USP40-214ENST00000483519 GRHPRQ9UBQ7 328 aa12□□□□□ -0.49
USP40-214ENST00000483519 AKR7A3O95154 331 aa12□□□□□ -0.49
USP40-214ENST00000483519 RENP00797 406 aa12□□□□□ -0.49
USP40-214ENST00000483519 SMIM6P0DI80 62 aa12□□□□□ -0.49
USP40-214ENST00000483519 ABOP16442 354 aa12□□□□□ -0.49
USP40-214ENST00000483519 HTR2CP28335 458 aa12□□□□□ -0.49
USP40-214ENST00000483519 NPBWR1P48145 328 aa12□□□□□ -0.49
USP40-214ENST00000483519 PNLIPRP2P54317 469 aa12□□□□□ -0.49
USP40-214ENST00000483519 IL13RA1P78552 427 aa12□□□□□ -0.49
USP40-214ENST00000483519 KIR2DS3Q14952 304 aa12□□□□□ -0.49
USP40-214ENST00000483519 PLEKHN1Q494U1 663 aaPredicted RBP12□□□□□ -0.49
USP40-214ENST00000483519 FDX2Q6P4F2 183 aa12□□□□□ -0.49
USP40-214ENST00000483519 RNF44Q7L0R7 432 aa12□□□□□ -0.49
USP40-214ENST00000483519 GRASPQ7Z6J2 395 aaPredicted RBP12□□□□□ -0.49
USP40-214ENST00000483519 BAP18Q8IXM2 172 aa12□□□□□ -0.49
USP40-214ENST00000483519 ZDHHC22Q8N966 263 aa12□□□□□ -0.49
USP40-214ENST00000483519 PLPP7Q8NBV4 271 aa12□□□□□ -0.49
USP40-214ENST00000483519 OR4N2Q8NGD1 307 aa12□□□□□ -0.49
USP40-214ENST00000483519 RERGQ96A58 199 aaPredicted RBP12□□□□□ -0.49
USP40-214ENST00000483519 SLC6A7Q99884 636 aa12□□□□□ -0.49
USP40-214ENST00000483519 G6PC3Q9BUM1 346 aa12□□□□□ -0.49
USP40-214ENST00000483519 ZDHHC4Q9NPG8 344 aa12□□□□□ -0.49
USP40-214ENST00000483519 UQCC1Q9NVA1 299 aa12□□□□□ -0.49
USP40-214ENST00000483519 VSIG4Q9Y279 399 aa12□□□□□ -0.49
USP40-214ENST00000483519 ATG2AQ2TAZ0 1938 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 NOTCH4Q99466 2003 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 DCTN6O00399 190 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 SCAMP1O15126 338 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 DOK2O60496 412 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 TXNDC12O95881 172 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 IL2RAP01589 272 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 LIPCP11150 499 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 ZNF28P17035 718 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 RAB5BP61020 215 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 PPP1R1AQ13522 171 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 ZNF74Q16587 644 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 PNLIPRP3Q17RR3 467 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 RNASE10Q5GAN6 216 aaKnown RBP11.99□□□□□ -0.49
USP40-214ENST00000483519 NKAPLQ5M9Q1 402 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 FAHD2BQ6P2I3 314 aaPredicted RBP11.99□□□□□ -0.49
USP40-214ENST00000483519 PRSS41Q7RTY9 318 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 ADGRE4PQ86SQ3 457 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 PARGQ86W56 976 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 LRRC75AQ8NAA5 344 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 FAHD2AQ96GK7 314 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 PILRAQ9UKJ1 303 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 GTF2A1LQ9UNN4 478 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 DHDHQ9UQ10 334 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 IGKV1D-42A0A075B6H8 117 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 TEX13DA0A0J9YY54 714 aaPredicted RBP11.99□□□□□ -0.49
USP40-214ENST00000483519 C9orf170A2RU37 121 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 NPIPB9F8W1W9 429 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 EIF3GO75821 320 aaKnown RBP eCLIP11.99□□□□□ -0.49
USP40-214ENST00000483519 S100A8P05109 93 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 CSN2P05814 226 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 S100A9P06702 114 aaKnown RBP11.99□□□□□ -0.49
USP40-214ENST00000483519 CD2P06729 351 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 SLC35E2P0CK97 266 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 PGAM2P15259 253 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 SKP1P63208 163 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 PMPCAQ10713 525 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 SGCGQ13326 291 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 RCBTB1Q8NDN9 531 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 OR5T3Q8NGG3 340 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 LIPHQ8WWY8 451 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 WNT2BQ93097 391 aa11.99□□□□□ -0.49
USP40-214ENST00000483519 CHMP1AQ9HD42 196 aaPredicted RBP11.99□□□□□ -0.49
USP40-214ENST00000483519 MRPS2Q9Y399 296 aaKnown RBP11.99□□□□□ -0.49
USP40-214ENST00000483519 SERINC4A6NH21 518 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 TNFSF14O43557 240 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 PNMTP11086 282 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 PSMB6P28072 239 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 PPICP45877 212 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 CXADRP78310 365 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 PJVKQ0ZLH3 352 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 GPR18Q14330 331 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 TMEM225Q6GV28 225 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 ZNF440Q8IYI8 595 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 ZFP82Q8N141 532 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 DCUN1D4Q92564 292 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 GAL3ST1Q99999 423 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 CST11Q9H112 138 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 SEMA6CQ9H3T2 930 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 KLK13Q9UKR3 277 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 COL4A2P08572 1712 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 MEX3AA1L020 520 aaKnown RBP11.98□□□□□ -0.49
USP40-214ENST00000483519 H7C1C5 153 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 F12P00748 615 aaPredicted RBP11.98□□□□□ -0.49
USP40-214ENST00000483519 F13BP05160 661 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 MPZP25189 248 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 RPS27P42677 84 aaKnown RBP11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms