RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 TNFRSF10CO14798 259 aa8.65□□□□□ -1.02
HDAC3-205ENST00000469550 KCNJ13O60928 360 aa8.65□□□□□ -1.02
HDAC3-205ENST00000469550 UPK3AO75631 287 aa8.65□□□□□ -1.02
HDAC3-205ENST00000469550 CTAG2O75638 210 aa8.65□□□□□ -1.02
HDAC3-205ENST00000469550 IFNA4P05014 189 aa8.65□□□□□ -1.02
HDAC3-205ENST00000469550 TMIGD3P0DMS9 266 aaPredicted RBP8.65□□□□□ -1.02
HDAC3-205ENST00000469550 SMIM10L1P0DMW3 83 aa8.65□□□□□ -1.02
HDAC3-205ENST00000469550 GTF2F2P13984 249 aa8.65□□□□□ -1.02
HDAC3-205ENST00000469550 CTSEP14091 401 aa8.65□□□□□ -1.02
HDAC3-205ENST00000469550 HLA-GP17693 338 aa8.65□□□□□ -1.02
HDAC3-205ENST00000469550 TLX1P31314 330 aaPredicted RBP8.65□□□□□ -1.02
HDAC3-205ENST00000469550 PRSS3P35030 304 aa8.65□□□□□ -1.02
HDAC3-205ENST00000469550 RAB13P51153 203 aa8.65□□□□□ -1.02
HDAC3-205ENST00000469550 PSMD4P55036 377 aaKnown RBP8.65□□□□□ -1.02
HDAC3-205ENST00000469550 ACTBP60709 375 aa8.65□□□□□ -1.02
HDAC3-205ENST00000469550 PPIAP62937 165 aaKnown RBP8.65□□□□□ -1.02
HDAC3-205ENST00000469550 ERVK-25P63136 954 aa8.65□□□□□ -1.02
HDAC3-205ENST00000469550 ACTG1P63261 375 aa8.65□□□□□ -1.02
HDAC3-205ENST00000469550 DHRS7BQ6IAN0 325 aaPredicted RBP8.65□□□□□ -1.02
HDAC3-205ENST00000469550 LIN54Q6MZP7 749 aa8.65□□□□□ -1.02
HDAC3-205ENST00000469550 STEAP1BQ6NZ63 245 aa8.65□□□□□ -1.02
HDAC3-205ENST00000469550 OR2W3Q7Z3T1 314 aa8.65□□□□□ -1.02
HDAC3-205ENST00000469550 BEST3Q8N1M1 668 aa8.65□□□□□ -1.02
HDAC3-205ENST00000469550 TMEM185AQ8NFB2 350 aa8.65□□□□□ -1.02
HDAC3-205ENST00000469550 OR52E1Q8NGJ3 308 aa8.65□□□□□ -1.02
HDAC3-205ENST00000469550 OR51L1Q8NGJ5 315 aa8.65□□□□□ -1.02
HDAC3-205ENST00000469550 OR5M8Q8NGP6 311 aa8.65□□□□□ -1.02
HDAC3-205ENST00000469550 OR5AK2Q8NH90 309 aa8.65□□□□□ -1.02
HDAC3-205ENST00000469550 GRHL3Q8TE85 626 aa8.65□□□□□ -1.02
HDAC3-205ENST00000469550 ZNRF4Q8WWF5 429 aa8.65□□□□□ -1.02
HDAC3-205ENST00000469550 SMIM10Q96HG1 83 aa8.65□□□□□ -1.02
HDAC3-205ENST00000469550 SERINC2Q96SA4 455 aa8.65□□□□□ -1.02
HDAC3-205ENST00000469550 TSNAXQ99598 290 aaKnown RBP8.65□□□□□ -1.02
HDAC3-205ENST00000469550 TIMM29Q9BSF4 260 aa8.65□□□□□ -1.02
HDAC3-205ENST00000469550 FAM117AQ9C073 453 aa8.65□□□□□ -1.02
HDAC3-205ENST00000469550 EXO5Q9H790 373 aa8.65□□□□□ -1.02
HDAC3-205ENST00000469550 SYNPO2LQ9H987 977 aa8.65□□□□□ -1.02
HDAC3-205ENST00000469550 ZNF107Q9UII5 783 aaPredicted RBP8.65□□□□□ -1.02
HDAC3-205ENST00000469550 OR5H14A6NHG9 310 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 TTLL8A6PVC2 850 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 HSPB2A8KAH6 182 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 MCIDASD6RGH6 385 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 RAD1O60671 282 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 SRPX2O60687 465 aaPredicted RBP8.64□□□□□ -1.03
HDAC3-205ENST00000469550 LDB3O75112 727 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 DNAJB6O75190 326 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 TNFP01375 233 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 ANXA2P07355 339 aaKnown RBP8.64□□□□□ -1.03
HDAC3-205ENST00000469550 NGFRP08138 427 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 OR4E1P0C645 316 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 ACHEP22303 614 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 AK4P27144 223 aaPredicted RBP8.64□□□□□ -1.03
HDAC3-205ENST00000469550 ADH7P40394 386 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 RFC3P40938 356 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 ACAA2P42765 397 aaKnown RBP8.64□□□□□ -1.03
HDAC3-205ENST00000469550 SLC25A1P53007 311 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 UBE2MP61081 183 aaKnown RBP8.64□□□□□ -1.03
HDAC3-205ENST00000469550 RPS15AP62244 130 aaKnown RBP8.64□□□□□ -1.03
HDAC3-205ENST00000469550 CCL7P80098 99 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 ZFP36L1Q07352 338 aaKnown RBP8.64□□□□□ -1.03
HDAC3-205ENST00000469550 SNTB1Q13884 538 aaKnown RBP8.64□□□□□ -1.03
HDAC3-205ENST00000469550 HSPB2Q16082 182 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 TRMT12Q53H54 448 aaKnown RBP8.64□□□□□ -1.03
HDAC3-205ENST00000469550 VWA2Q5GFL6 755 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 ALG10BQ5I7T1 473 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 LINC01590Q5TEZ4 76 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 ELP2Q6IA86 826 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 C11orf87Q6NUJ2 197 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 ULK3Q6PHR2 472 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 ENPP7Q6UWV6 458 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 ACOT7LQ6ZUV0 252 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 SLC16A9Q7RTY1 509 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 FAM220AQ7Z4H9 259 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 VN1R4Q7Z5H5 301 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 ZSCAN2Q7Z7L9 614 aaPredicted RBP8.64□□□□□ -1.03
HDAC3-205ENST00000469550 TMEM229BQ8NBD8 167 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 OR1M1Q8NGA1 313 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 OR4D10Q8NGI6 311 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 GPX8Q8TED1 209 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 DUSP19Q8WTR2 217 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 HOXB13Q92826 284 aaPredicted RBP8.64□□□□□ -1.03
HDAC3-205ENST00000469550 TSACCQ96A04 125 aaPredicted RBP8.64□□□□□ -1.03
HDAC3-205ENST00000469550 CCNL2Q96S94 520 aaPredicted RBP8.64□□□□□ -1.03
HDAC3-205ENST00000469550 GPX7Q96SL4 187 aaPredicted RBP8.64□□□□□ -1.03
HDAC3-205ENST00000469550 POTEKPQ9BYX7 375 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 TSPAN10Q9H1Z9 355 aaPredicted RBP8.64□□□□□ -1.03
HDAC3-205ENST00000469550 MKKSQ9NPJ1 570 aaPredicted RBP8.64□□□□□ -1.03
HDAC3-205ENST00000469550 FBXO34Q9NWN3 711 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 CPNE7Q9UBL6 633 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 MOKQ9UQ07 419 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 CARHSP1Q9Y2V2 147 aaKnown RBP8.64□□□□□ -1.03
HDAC3-205ENST00000469550 PLEKHM1Q9Y4G2 1056 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 ASH1LQ9NR48 2969 aaKnown RBP8.64□□□□□ -1.03
HDAC3-205ENST00000469550 TMEM82A0PJX8 343 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 OR6C74A6NCV1 312 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 OR14I1A6ND48 311 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 OR6C68A6NDL8 312 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 PRR19A6NJB7 356 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 TMEM200CA6NKL6 621 aa8.64□□□□□ -1.03
HDAC3-205ENST00000469550 PRR32B1ATL7 298 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms