RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 BIKQ13323 160 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 LRRC75BQ2VPJ9 315 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 FAM98BQ52LJ0 330 aaKnown RBP3.77□□□□□ -1.81
HMGB1-207ENST00000468384 TEX35Q5T0J7 233 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 CCDC122Q5T0U0 273 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 SLC27A4Q6P1M0 643 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 ZNF836Q6ZNA1 936 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 ZNF429Q86V71 674 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 PTOV1Q86YD1 416 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 ST13P4Q8IZP2 240 aaPredicted RBP3.77□□□□□ -1.81
HMGB1-207ENST00000468384 KRT222Q8N1A0 295 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 C10orf53Q8N6V4 93 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 TRPV3Q8NET8 790 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 FAM81BQ96LP2 452 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 C16orf45Q96MC5 204 aaPredicted RBP3.77□□□□□ -1.81
HMGB1-207ENST00000468384 RNF145Q96MT1 663 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 ZNF570Q96NI8 536 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 TSPAN32Q96QS1 320 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 FAM114A2Q9NRY5 505 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 CYSLTR2Q9NS75 346 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 LYARQ9NX58 379 aaKnown RBP3.77□□□□□ -1.81
HMGB1-207ENST00000468384 EMC3Q9P0I2 261 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 NOSIPQ9Y314 301 aaKnown RBP3.77□□□□□ -1.81
HMGB1-207ENST00000468384 OR10H1Q9Y4A9 318 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 MAD1L1Q9Y6D9 718 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 GIMAP1-GIMAP5A0A087WTJ2 511 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 ARPC4-TTLL3A0A0A6YYG9 625 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 A0A0B4J293 547 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 MEIOCA2RUB1 952 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 ANXA2P2A6NMY6 339 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 PGRMC2O15173 223 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 CLPTM1O96005 669 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 VPREB1P12018 145 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 CBR1P16152 277 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 ZNF10P21506 573 aaPredicted RBP3.76□□□□□ -1.81
HMGB1-207ENST00000468384 EEF1B2P24534 225 aaKnown RBP3.76□□□□□ -1.81
HMGB1-207ENST00000468384 HNRNPH1P31943 449 aaKnown RBP3.76□□□□□ -1.81
HMGB1-207ENST00000468384 SAA4P35542 130 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 PITPNBP48739 271 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 GSCP56915 257 aaPredicted RBP3.76□□□□□ -1.81
HMGB1-207ENST00000468384 RPS23P62266 143 aaKnown RBP3.76□□□□□ -1.81
HMGB1-207ENST00000468384 TBPL1P62380 186 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 TRA2BP62995 288 aaKnown RBP3.76□□□□□ -1.81
HMGB1-207ENST00000468384 TNFRSF9Q07011 255 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 MZT1Q08AG7 82 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 ACSM1Q08AH1 577 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 CBX3Q13185 183 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 FOXE3Q13461 319 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 PDE7AQ13946 482 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 SMU1Q2TAY7 513 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 C2orf76Q3KRA6 126 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 LSM12Q3MHD2 195 aaKnown RBP3.76□□□□□ -1.81
HMGB1-207ENST00000468384 ZNF658Q5TYW1 1059 aaPredicted RBP3.76□□□□□ -1.81
HMGB1-207ENST00000468384 STEAP4Q687X5 459 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 LINC00322Q6ZN03 302 aaPredicted RBP3.76□□□□□ -1.81
HMGB1-207ENST00000468384 ZNF813Q6ZN06 617 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 FAM57BQ71RH2 274 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 ZER1Q7Z7L7 766 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 TBC1D19Q8N5T2 526 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 BCAS4Q8TDM0 211 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 SLC9A6Q92581 669 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 TMBIM1Q969X1 311 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 TMEM18Q96B42 140 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 LINGO1Q96FE5 620 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 C19orf43Q9BQ61 176 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 TMED9Q9BVK6 235 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 DGCR6LQ9BY27 220 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 NMUR2Q9GZQ4 415 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 PCBD2Q9H0N5 130 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 KCNN2Q9H2S1 579 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 NOL11Q9H8H0 719 aaKnown RBP3.76□□□□□ -1.81
HMGB1-207ENST00000468384 MID1IP1Q9NPA3 183 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 ISYNA1Q9NPH2 558 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 ZFP57Q9NU63 452 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 TMEM106BQ9NUM4 274 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 CLN8Q9UBY8 286 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 MIOXQ9UGB7 285 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 OR14J1Q9UGF5 321 aa3.76□□□□□ -1.81
HMGB1-207ENST00000468384 IGKV3D-15A0A087WSY6 115 aa3.75□□□□□ -1.81
HMGB1-207ENST00000468384 MACROD2A1Z1Q3 448 aa3.75□□□□□ -1.81
HMGB1-207ENST00000468384 TM9SF1O15321 606 aa3.75□□□□□ -1.81
HMGB1-207ENST00000468384 MRPL33O75394 65 aaKnown RBP3.75□□□□□ -1.81
HMGB1-207ENST00000468384 PSIP1O75475 530 aaKnown RBP3.75□□□□□ -1.81
HMGB1-207ENST00000468384 AGTP01019 485 aa3.75□□□□□ -1.81
HMGB1-207ENST00000468384 LINGO3P0C6S8 592 aa3.75□□□□□ -1.81
HMGB1-207ENST00000468384 FAM58BPP0C7Q3 252 aa3.75□□□□□ -1.81
HMGB1-207ENST00000468384 G6PDP11413 515 aa3.75□□□□□ -1.81
HMGB1-207ENST00000468384 NMBRP28336 390 aa3.75□□□□□ -1.81
HMGB1-207ENST00000468384 IMPA1P29218 277 aa3.75□□□□□ -1.81
HMGB1-207ENST00000468384 STXBP1P61764 594 aaKnown RBP3.75□□□□□ -1.81
HMGB1-207ENST00000468384 ARF6P62330 175 aa3.75□□□□□ -1.81
HMGB1-207ENST00000468384 NPRL3Q12980 569 aa3.75□□□□□ -1.81
HMGB1-207ENST00000468384 PAFAH1B3Q15102 231 aaKnown RBP3.75□□□□□ -1.81
HMGB1-207ENST00000468384 AANATQ16613 207 aa3.75□□□□□ -1.81
HMGB1-207ENST00000468384 VWC2Q2TAL6 325 aa3.75□□□□□ -1.81
HMGB1-207ENST00000468384 KLHL26Q53HC5 615 aa3.75□□□□□ -1.81
HMGB1-207ENST00000468384 CCDC183Q5T5S1 534 aa3.75□□□□□ -1.81
HMGB1-207ENST00000468384 CPTPQ5TA50 214 aa3.75□□□□□ -1.81
HMGB1-207ENST00000468384 WDR25Q64LD2 544 aaPredicted RBP3.75□□□□□ -1.81
HMGB1-207ENST00000468384 NCBP2-AS2Q69YL0 99 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms