RNA–Protein interactions for RNA: ENST00000439369.6

SCLT1-202, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 966 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-202ENST00000439369 TVP23AA6NH52 213 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 C16orf97H3BN30 126 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 ZNF593O00488 134 aaPredicted RBP11.11□□□□□ -0.63
SCLT1-202ENST00000439369 XPNPEP2O43895 674 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 SELENOFO60613 162 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 LYZL6O75951 148 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 UBL3O95164 117 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 MPZL1O95297 269 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 CLDN14O95500 239 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 RAB36O95755 333 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 HOXC12P31275 282 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 ARR3P36575 388 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 FOXG1P55316 489 aaPredicted RBP11.11□□□□□ -0.63
SCLT1-202ENST00000439369 HIST1H3AP68431 136 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 SORDQ00796 357 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 SCRN3Q0VDG4 424 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 TBRG1Q3YBR2 411 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 TIMM23BQ5SRD1 257 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 HIST2H3PS2Q5TEC6 136 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 RNLSQ5VYX0 342 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 KLHL24Q6TFL4 600 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 HIST2H3AQ71DI3 136 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 SLC16A14Q7RTX9 510 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 SLC35F2Q8IXU6 374 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 FAM169BQ8N8A8 192 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 ZNF540Q8NDQ6 660 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 GJC3Q8NFK1 279 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 OR52I1Q8NGK6 324 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 OR6N2Q8NGY6 317 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 OR2AJ1Q8NGZ0 328 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 ITLN2Q8WWU7 325 aaPredicted RBP11.11□□□□□ -0.63
SCLT1-202ENST00000439369 GGHQ92820 318 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 TMEM80Q96HE8 168 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 COPS4Q9BT78 406 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 ZNF416Q9BWM5 594 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 AMBNQ9NP70 447 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 SLC17A5Q9NRA2 495 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 ATPIF1Q9UII2 106 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 POLR1DQ9Y2S0 133 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 PCDHGB5Q9Y5G0 923 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 TIMM10BQ9Y5J6 103 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 LHFPL6Q9Y693 200 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 CFAP46Q8IYW2 2715 aa11.11□□□□□ -0.63
SCLT1-202ENST00000439369 ALPK2Q86TB3 2170 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 INTS1Q8N201 2190 aaKnown RBP11.1□□□□□ -0.63
SCLT1-202ENST00000439369 WIPF3A6NGB9 483 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 ZNF670-ZNF695F2Z2N8 137 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 ZG16O60844 167 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 GPANK1O95872 356 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 WNT11O96014 354 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 SCG5P05408 212 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 CDK1P06493 297 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 SPARCP09486 303 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 ALOX5APP20292 161 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 UGT2B10P36537 528 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 PEX19P40855 299 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 NAA10P41227 235 aaPredicted RBP11.1□□□□□ -0.63
SCLT1-202ENST00000439369 UBE2NP61088 152 aaKnown RBP11.1□□□□□ -0.63
SCLT1-202ENST00000439369 ST3GAL4Q11206 333 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 MEP1BQ16820 701 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 C3orf36Q3SXR2 165 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 C9orf135Q5VTT2 229 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 SLC18B1Q6NT16 456 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 TMEM53Q6P2H8 277 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 KCTD18Q6PI47 426 aaPredicted RBP11.1□□□□□ -0.63
SCLT1-202ENST00000439369 LYPD4Q6UWN0 246 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 B3GLCTQ6Y288 498 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 AHSA2Q719I0 299 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 PRSS48Q7RTY5 328 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 DPY19L4Q7Z388 723 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 SKA3Q8IX90 412 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 STX19Q8N4C7 294 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 FOXN4Q96NZ1 517 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 SIGLEC11Q96RL6 698 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 CDCA4Q9BXL8 241 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 C1orf198Q9H425 327 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 ZNF696Q9H7X3 374 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 EMC7Q9NPA0 242 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 ASH2LQ9UBL3 628 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 LAMP5Q9UJQ1 280 aa11.1□□□□□ -0.63
SCLT1-202ENST00000439369 EXOSC1Q9Y3B2 195 aaKnown RBP11.1□□□□□ -0.63
SCLT1-202ENST00000439369 RP1L1Q8IWN7 2480 aaPredicted RBP11.1□□□□□ -0.63
SCLT1-202ENST00000439369 DAPL1A0PJW8 107 aa11.09□□□□□ -0.63
SCLT1-202ENST00000439369 RGS10O43665 173 aa11.09□□□□□ -0.63
SCLT1-202ENST00000439369 RAD51DO75771 328 aa11.09□□□□□ -0.63
SCLT1-202ENST00000439369 SEC14L2O76054 403 aa11.09□□□□□ -0.63
SCLT1-202ENST00000439369 LYNP07948 512 aa11.09□□□□□ -0.63
SCLT1-202ENST00000439369 MRPL3P09001 348 aaKnown RBP11.09□□□□□ -0.63
SCLT1-202ENST00000439369 MMP7P09237 267 aaPredicted RBP11.09□□□□□ -0.63
SCLT1-202ENST00000439369 COX5BP10606 129 aa11.09□□□□□ -0.63
SCLT1-202ENST00000439369 PLA2G2AP14555 144 aa11.09□□□□□ -0.63
SCLT1-202ENST00000439369 MYL12AP19105 171 aa11.09□□□□□ -0.63
SCLT1-202ENST00000439369 CAPZA2P47755 286 aa11.09□□□□□ -0.63
SCLT1-202ENST00000439369 ACTA2P62736 377 aa11.09□□□□□ -0.63
SCLT1-202ENST00000439369 ACTG2P63267 376 aa11.09□□□□□ -0.63
SCLT1-202ENST00000439369 ROM1Q03395 351 aa11.09□□□□□ -0.63
SCLT1-202ENST00000439369 EGR3Q06889 387 aa11.09□□□□□ -0.63
SCLT1-202ENST00000439369 DBPQ10586 325 aaPredicted RBP11.09□□□□□ -0.63
SCLT1-202ENST00000439369 ECH1Q13011 328 aa11.09□□□□□ -0.63
SCLT1-202ENST00000439369 DEGS2Q6QHC5 323 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms