RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 VSIG4Q9Y279 399 aa8.85□□□□□ -0.99
SS18-203ENST00000415083 LOC100289279A0A1B0GTE1 492 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 OR14I1A6ND48 311 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 F5H5P2 479 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 SRPX2O60687 465 aaPredicted RBP8.84□□□□□ -0.99
SS18-203ENST00000415083 DXOO77932 396 aaKnown RBP8.84□□□□□ -0.99
SS18-203ENST00000415083 CTRB1P17538 263 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 MAPK3P27361 379 aaPredicted RBP8.84□□□□□ -0.99
SS18-203ENST00000415083 SCAND1P57086 179 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 ZP2Q05996 745 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 FMODQ06828 376 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 FAM74A1Q5RGS3 127 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 CTRB2Q6GPI1 263 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 STEAP1BQ6NZ63 245 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 OR5M9Q8NGP3 310 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 LHFPL5Q8TAF8 219 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 SCARB1Q8WTV0 552 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 CMBLQ96DG6 245 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 SLC6A7Q99884 636 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 MRI1Q9BV20 369 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 PPA2Q9H2U2 334 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 ADAMTS9Q9P2N4 1935 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 SLC16A7O60669 478 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 TPPPO94811 219 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 RLN1P04808 185 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 OR4E1P0C645 316 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 GALNSP34059 522 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 EBPQ15125 230 aaKnown RBP8.84□□□□□ -0.99
SS18-203ENST00000415083 TSSK4Q6SA08 328 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 NUP54Q7Z3B4 507 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 ZNF440Q8IYI8 595 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 ZNF679Q8IYX0 411 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 BOLLQ8N9W6 283 aaKnown RBP8.84□□□□□ -0.99
SS18-203ENST00000415083 RLN3Q8WXF3 142 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 CCNL2Q96S94 520 aaPredicted RBP8.84□□□□□ -0.99
SS18-203ENST00000415083 OR8D2Q9GZM6 311 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 ARL6Q9H0F7 186 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 FRG2CA6NGY1 282 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 FTCDNL1E5RQL4 147 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 CSF1P09603 554 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 AKAIN1P0CW23 69 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 LIPCP11150 499 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 QRFPP83859 136 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 ZNF273Q14593 569 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 GLYATL3Q5SZD4 288 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 GSG1LQ6UXU4 331 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 CDH26Q8IXH8 852 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 SDR16C5Q8N3Y7 309 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 GPR119Q8TDV5 335 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 ST7LQ8TDW4 575 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 TCTN2Q96GX1 697 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 DHCR7Q9UBM7 475 aaKnown RBP8.84□□□□□ -0.99
SS18-203ENST00000415083 LHX6Q9UPM6 363 aa8.84□□□□□ -0.99
SS18-203ENST00000415083 RNF222A6NCQ9 220 aa8.83□□□□□ -1
SS18-203ENST00000415083 TTLL8A6PVC2 850 aa8.83□□□□□ -1
SS18-203ENST00000415083 MS4A18H0YCH9 400 aa8.83□□□□□ -1
SS18-203ENST00000415083 SCDO00767 359 aa8.83□□□□□ -1
SS18-203ENST00000415083 PLPP3O14495 311 aa8.83□□□□□ -1
SS18-203ENST00000415083 CCSO14618 274 aa8.83□□□□□ -1
SS18-203ENST00000415083 IGLV3-19P01714 112 aa8.83□□□□□ -1
SS18-203ENST00000415083 CD74P04233 296 aa8.83□□□□□ -1
SS18-203ENST00000415083 ZNF28P17035 718 aa8.83□□□□□ -1
SS18-203ENST00000415083 MRPS21P82921 87 aaKnown RBP8.83□□□□□ -1
SS18-203ENST00000415083 RASGEF1BQ0VAM2 473 aa8.83□□□□□ -1
SS18-203ENST00000415083 BAMBIQ13145 260 aa8.83□□□□□ -1
SS18-203ENST00000415083 UNC119Q13432 240 aa8.83□□□□□ -1
SS18-203ENST00000415083 RAB11BQ15907 218 aa8.83□□□□□ -1
SS18-203ENST00000415083 MS4A18Q3C1V0 323 aa8.83□□□□□ -1
SS18-203ENST00000415083 VWA2Q5GFL6 755 aa8.83□□□□□ -1
SS18-203ENST00000415083 KIAA0895LQ68EN5 471 aa8.83□□□□□ -1
SS18-203ENST00000415083 JMJD6Q6NYC1 403 aaPredicted RBP8.83□□□□□ -1
SS18-203ENST00000415083 DEFB119Q8N690 84 aa8.83□□□□□ -1
SS18-203ENST00000415083 ESX1Q8N693 406 aa8.83□□□□□ -1
SS18-203ENST00000415083 GVQW1Q8N7I0 195 aa8.83□□□□□ -1
SS18-203ENST00000415083 ZNF441Q8N8Z8 693 aa8.83□□□□□ -1
SS18-203ENST00000415083 SLC25A36Q96CQ1 311 aa8.83□□□□□ -1
SS18-203ENST00000415083 ZNF578Q96N58 590 aaPredicted RBP8.83□□□□□ -1
SS18-203ENST00000415083 ATG5Q9H1Y0 275 aa8.83□□□□□ -1
SS18-203ENST00000415083 TTYH1Q9H313 450 aaPredicted RBP8.83□□□□□ -1
SS18-203ENST00000415083 MMP17Q9ULZ9 603 aa8.83□□□□□ -1
SS18-203ENST00000415083 LOC390937A0A1W2PQ73 354 aa8.83□□□□□ -1
SS18-203ENST00000415083 C2orf72A6NCS6 295 aa8.83□□□□□ -1
SS18-203ENST00000415083 OR5K4A6NMS3 321 aa8.83□□□□□ -1
SS18-203ENST00000415083 BET1O15155 118 aa8.83□□□□□ -1
SS18-203ENST00000415083 HCRTR2O43614 444 aa8.83□□□□□ -1
SS18-203ENST00000415083 ZNF217O75362 1048 aa8.83□□□□□ -1
SS18-203ENST00000415083 SPDEFO95238 335 aa8.83□□□□□ -1
SS18-203ENST00000415083 PLATP00750 562 aa8.83□□□□□ -1
SS18-203ENST00000415083 RPA2P15927 270 aa8.83□□□□□ -1
SS18-203ENST00000415083 RPL27P61353 136 aaKnown RBP8.83□□□□□ -1
SS18-203ENST00000415083 SRSF4Q08170 494 aaKnown RBP8.83□□□□□ -1
SS18-203ENST00000415083 PTCRAQ6ISU1 281 aaPredicted RBP8.83□□□□□ -1
SS18-203ENST00000415083 OR6K3Q8NGY3 331 aa8.83□□□□□ -1
SS18-203ENST00000415083 ZNF563Q8TA94 476 aa8.83□□□□□ -1
SS18-203ENST00000415083 TSEN15Q8WW01 171 aaKnown RBP8.83□□□□□ -1
SS18-203ENST00000415083 ST8SIA2Q92186 375 aa8.83□□□□□ -1
SS18-203ENST00000415083 ZNF75AQ96N20 296 aa8.83□□□□□ -1
SS18-203ENST00000415083 TGM7Q96PF1 710 aa8.83□□□□□ -1
SS18-203ENST00000415083 CDCA3Q99618 268 aaPredicted RBP8.83□□□□□ -1
SS18-203ENST00000415083 SOX7Q9BT81 388 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms