RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 TAS2R4Q9NYW5 299 aa11.97□□□□□ -0.49
CCDC3-202ENST00000378839 PPIEQ9UNP9 301 aaKnown RBP11.97□□□□□ -0.49
CCDC3-202ENST00000378839 ETV7Q9Y603 341 aa11.97□□□□□ -0.49
CCDC3-202ENST00000378839 PEX14O75381 377 aa11.97□□□□□ -0.49
CCDC3-202ENST00000378839 POU3F4P49335 361 aa11.97□□□□□ -0.49
CCDC3-202ENST00000378839 ARRB1P49407 418 aaPredicted RBP11.97□□□□□ -0.49
CCDC3-202ENST00000378839 RAG2P55895 527 aa11.97□□□□□ -0.49
CCDC3-202ENST00000378839 OLFML2AQ68BL7 652 aa11.97□□□□□ -0.49
CCDC3-202ENST00000378839 TMEM205Q6UW68 189 aa11.97□□□□□ -0.49
CCDC3-202ENST00000378839 KRT77Q7Z794 578 aa11.97□□□□□ -0.49
CCDC3-202ENST00000378839 CDH24Q86UP0 819 aa11.97□□□□□ -0.49
CCDC3-202ENST00000378839 OR8H3Q8N146 312 aa11.97□□□□□ -0.49
CCDC3-202ENST00000378839 LRRC20Q8TCA0 184 aa11.97□□□□□ -0.49
CCDC3-202ENST00000378839 CCDC74BQ96LY2 380 aa11.97□□□□□ -0.49
CCDC3-202ENST00000378839 C1QTNF6Q9BXI9 259 aa11.97□□□□□ -0.49
CCDC3-202ENST00000378839 CA10Q9NS85 328 aa11.97□□□□□ -0.49
CCDC3-202ENST00000378839 B3GAT1Q9P2W7 334 aa11.97□□□□□ -0.49
CCDC3-202ENST00000378839 ELF5Q9UKW6 265 aaPredicted RBP11.97□□□□□ -0.49
CCDC3-202ENST00000378839 EMC9Q9Y3B6 208 aa11.97□□□□□ -0.49
CCDC3-202ENST00000378839 VSTM2BA6NLU5 285 aa11.96□□□□□ -0.49
CCDC3-202ENST00000378839 ZNF814B7Z6K7 855 aa11.96□□□□□ -0.49
CCDC3-202ENST00000378839 PHYHO14832 338 aa11.96□□□□□ -0.49
CCDC3-202ENST00000378839 XRCC3O43542 346 aa11.96□□□□□ -0.49
CCDC3-202ENST00000378839 MNDAP41218 407 aa11.96□□□□□ -0.49
CCDC3-202ENST00000378839 C17orf67Q0P5P2 114 aa11.96□□□□□ -0.49
CCDC3-202ENST00000378839 TMEM225Q6GV28 225 aa11.96□□□□□ -0.49
CCDC3-202ENST00000378839 OR52N5Q8NH56 324 aa11.96□□□□□ -0.49
CCDC3-202ENST00000378839 ASB17Q8WXJ9 295 aa11.96□□□□□ -0.49
CCDC3-202ENST00000378839 GPR137Q96N19 417 aa11.96□□□□□ -0.49
CCDC3-202ENST00000378839 SRPK3Q9UPE1 567 aa11.96□□□□□ -0.49
CCDC3-202ENST00000378839 MRPS18BQ9Y676 258 aaKnown RBP11.96□□□□□ -0.49
CCDC3-202ENST00000378839 MED12Q93074 2177 aa11.96□□□□□ -0.49
CCDC3-202ENST00000378839 SULT1B1O43704 296 aa11.96□□□□□ -0.5
CCDC3-202ENST00000378839 OR2J2O76002 312 aa11.96□□□□□ -0.5
CCDC3-202ENST00000378839 ZNF432O94892 652 aa11.96□□□□□ -0.5
CCDC3-202ENST00000378839 ZNF250P15622 560 aa11.96□□□□□ -0.5
CCDC3-202ENST00000378839 IGFBP3P17936 291 aaPredicted RBP11.96□□□□□ -0.5
CCDC3-202ENST00000378839 CFPP27918 469 aa11.96□□□□□ -0.5
CCDC3-202ENST00000378839 DHPSP49366 369 aaPredicted RBP11.96□□□□□ -0.5
CCDC3-202ENST00000378839 POU3F1Q03052 451 aaPredicted RBP11.96□□□□□ -0.5
CCDC3-202ENST00000378839 ZMYND11Q15326 602 aa11.96□□□□□ -0.5
CCDC3-202ENST00000378839 ANKRD16Q6P6B7 361 aa11.96□□□□□ -0.5
CCDC3-202ENST00000378839 NLRC3Q7RTR2 1065 aa11.96□□□□□ -0.5
CCDC3-202ENST00000378839 DCXRQ7Z4W1 244 aa11.96□□□□□ -0.5
CCDC3-202ENST00000378839 FAM109AQ8N4B1 249 aa11.96□□□□□ -0.5
CCDC3-202ENST00000378839 OR1J4Q8NGS1 313 aa11.96□□□□□ -0.5
CCDC3-202ENST00000378839 NUBPLQ8TB37 319 aa11.96□□□□□ -0.5
CCDC3-202ENST00000378839 ZNF431Q8TF32 576 aaPredicted RBP11.96□□□□□ -0.5
CCDC3-202ENST00000378839 TMEM185BQ9H7F4 350 aa11.96□□□□□ -0.5
CCDC3-202ENST00000378839 PRDM6Q9NQX0 595 aa11.96□□□□□ -0.5
CCDC3-202ENST00000378839 MYEF2Q9P2K5 600 aaKnown RBP11.96□□□□□ -0.5
CCDC3-202ENST00000378839 CGGBP1Q9UFW8 167 aaPredicted RBP11.96□□□□□ -0.5
CCDC3-202ENST00000378839 FBXL2Q9UKC9 423 aa11.96□□□□□ -0.5
CCDC3-202ENST00000378839 RHBDD3Q9Y3P4 386 aa11.96□□□□□ -0.5
CCDC3-202ENST00000378839 TMEM272A0A1B0GTI8 110 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 CELA2AP08217 269 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 ANXA3P12429 323 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 ZP4Q12836 540 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 LGALSLQ3ZCW2 172 aaPredicted RBP11.95□□□□□ -0.5
CCDC3-202ENST00000378839 ELFN2Q5R3F8 820 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 H1FNTQ75WM6 255 aaPredicted RBP11.95□□□□□ -0.5
CCDC3-202ENST00000378839 ZNF227Q86WZ6 799 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 NOX3Q9HBY0 568 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 NPDC1Q9NQX5 325 aaPredicted RBP11.95□□□□□ -0.5
CCDC3-202ENST00000378839 NPTNQ9Y639 398 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 ADAMTS9Q9P2N4 1935 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 GGT3PA6NGU5 568 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 LIPT2A6NK58 231 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 TOX3O15405 576 aaPredicted RBP11.95□□□□□ -0.5
CCDC3-202ENST00000378839 OR2T1O43869 369 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 ZNF28P17035 718 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 PI4KAP42356 2102 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 EMP2P54851 167 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 DCDP81605 110 aaKnown RBP11.95□□□□□ -0.5
CCDC3-202ENST00000378839 PCK2Q16822 640 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 OR52B4Q8NGK2 314 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 MFSD8Q8NHS3 518 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 ST8SIA1Q92185 356 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 FAM3DQ96BQ1 224 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 GAL3ST1Q99999 423 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 ZNF275Q9NSD4 429 aaPredicted RBP11.95□□□□□ -0.5
CCDC3-202ENST00000378839 ZNF224Q9NZL3 707 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 SIT1Q9Y3P8 196 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 ACOT7O00154 380 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 SSNA1O43805 119 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 RAMP1O60894 148 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 TOXO94900 526 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 DKK1O94907 266 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 VSIG10L2P0DP72 767 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 P2RY4P51582 365 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 DLX5P56178 289 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 HSF1Q00613 529 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 GLO1Q04760 184 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 MFAP5Q13361 173 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 POU4F3Q15319 338 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 CREB3L2Q70SY1 520 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 CPEB2Q7Z5Q1 589 aaKnown RBP11.95□□□□□ -0.5
CCDC3-202ENST00000378839 OR10S1Q8NGN2 331 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 METTL17Q9H7H0 456 aaPredicted RBP11.95□□□□□ -0.5
CCDC3-202ENST00000378839 PRMT8Q9NR22 394 aaPredicted RBP11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms