RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 STARD8Q92502 1023 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 EEF1AKMT3Q96AZ1 226 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 WFIKKN1Q96NZ8 548 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 GSDMAQ96QA5 445 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 RTBDNQ9BSG5 229 aaPredicted RBP1.31□□□□□ -2.2
VPS13A-206ENST00000376646 PATZ1Q9HBE1 687 aaKnown RBP1.31□□□□□ -2.2
VPS13A-206ENST00000376646 DUX4Q9UBX2 424 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 LGALS13Q9UHV8 139 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 WDR19Q8NEZ3 1342 aa1.31□□□□□ -2.2
VPS13A-206ENST00000376646 A0A096LNJ9 63 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 H0YHG0 523 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 NDUFAB1O14561 156 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 MAGEB4O15481 346 aaPredicted RBP1.3□□□□□ -2.2
VPS13A-206ENST00000376646 NUPL2O15504 423 aaKnown RBP1.3□□□□□ -2.2
VPS13A-206ENST00000376646 EIF4E2O60573 245 aaKnown RBP1.3□□□□□ -2.2
VPS13A-206ENST00000376646 CLDN11O75508 207 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 OR8G3PP0DMU2 310 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 ADRB3P13945 408 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 GPX4P36969 197 aaPredicted RBP1.3□□□□□ -2.2
VPS13A-206ENST00000376646 CEACAM6P40199 344 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 NAMPTP43490 491 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 UBE2AP49459 152 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 PPOXP50336 477 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 RND2P52198 227 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 TCP10Q12799 353 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 TWF2Q6IBS0 349 aaKnown RBP1.3□□□□□ -2.2
VPS13A-206ENST00000376646 KRTAP5-7Q6L8G8 165 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 MBOAT1Q6ZNC8 495 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 HDDC2Q7Z4H3 204 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 CMC1Q7Z7K0 106 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 SCD5Q86SK9 330 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 BIVMQ86UB2 503 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 GABRG1Q8N1C3 465 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 ZNF786Q8N393 782 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 BBOF1Q8ND07 529 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 BPIFCQ8NFQ6 507 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 OR10J6PQ8NGY7 276 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 OR4S2Q8NH73 311 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 AGR3Q8TD06 166 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 TSEN15Q8WW01 171 aaKnown RBP1.3□□□□□ -2.2
VPS13A-206ENST00000376646 SRSF12Q8WXF0 261 aaKnown RBP1.3□□□□□ -2.2
VPS13A-206ENST00000376646 BMFQ96LC9 184 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 CTRCQ99895 268 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 TEKT3Q9BXF9 490 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 IFI27L2Q9H2X8 130 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 CCNB1IP1Q9NPC3 277 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 TMEM9BQ9NQ34 198 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 LYARQ9NX58 379 aaKnown RBP1.3□□□□□ -2.2
VPS13A-206ENST00000376646 CCDC59Q9P031 241 aaKnown RBP1.3□□□□□ -2.2
VPS13A-206ENST00000376646 PSG8Q9UQ74 426 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 SLC17A4Q9Y2C5 497 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 CAMTA1Q9Y6Y1 1673 aa1.3□□□□□ -2.2
VPS13A-206ENST00000376646 IGLV2-33A0A075B6J2 118 aaPredicted RBP1.29□□□□□ -2.2
VPS13A-206ENST00000376646 TRBV9A0A0B4J1U6 114 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 ANKRD63C9JTQ0 380 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 CASQ2O14958 399 aaPredicted RBP1.29□□□□□ -2.2
VPS13A-206ENST00000376646 ANGPTL7O43827 346 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 ICOSLGO75144 302 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 FKBP6O75344 327 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 FOXH1O75593 365 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 CTAG2O75638 210 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 GABARAPO95166 117 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 RAB3DO95716 219 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 OR5H8P0DN80 308 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 SFTPCP11686 197 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 GSTM3P21266 225 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 OMGP23515 440 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 STOMP27105 288 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 CSNK1EP49674 416 aaKnown RBP1.29□□□□□ -2.2
VPS13A-206ENST00000376646 RAB9AP51151 201 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 MAB21L1Q13394 359 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 IL18Q14116 193 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 SF3A2Q15428 464 aaKnown RBP1.29□□□□□ -2.2
VPS13A-206ENST00000376646 ZNF726P1Q15940 193 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 TSPO2Q5TGU0 170 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 OR52W1Q6IF63 320 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 PCP2Q8IVA1 136 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 NUBPLQ8TB37 319 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 ZNF596Q8TC21 504 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 LKAAEAR1Q8TD35 194 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 DNAJC1Q96KC8 554 aaKnown RBP1.29□□□□□ -2.2
VPS13A-206ENST00000376646 MTG1Q9BT17 334 aaPredicted RBP1.29□□□□□ -2.2
VPS13A-206ENST00000376646 TPK1Q9H3S4 243 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 TMEM165Q9HC07 324 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 SLC40A1Q9NP59 571 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 AGPAT4Q9NRZ5 378 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 C20orf96Q9NUD7 363 aaPredicted RBP1.29□□□□□ -2.2
VPS13A-206ENST00000376646 DDX18Q9NVP1 670 aaKnown RBP1.29□□□□□ -2.2
VPS13A-206ENST00000376646 PDP1Q9P0J1 537 aaPredicted RBP1.29□□□□□ -2.2
VPS13A-206ENST00000376646 PHLPP2Q6ZVD8 1323 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 TET2Q6N021 2002 aaPredicted RBP1.29□□□□□ -2.2
VPS13A-206ENST00000376646 PIKFYVEQ9Y2I7 2098 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 TRIOBPQ9H2D6 2365 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 INS-IGF2F8WCM5 200 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 SMKR1H3BMG3 65 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 CCNB2O95067 398 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 CD160O95971 181 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 SERPINE2P07093 398 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 ASGR1P07306 291 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 TLX1NBP0CAT3 122 aa1.29□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms