RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 RP2O75695 350 aa18.53■□□□□ 0.56
CCDC28B-201ENST00000373602 NDUFB2O95178 105 aa18.53■□□□□ 0.56
CCDC28B-201ENST00000373602 SCG5P05408 212 aa18.53■□□□□ 0.56
CCDC28B-201ENST00000373602 CDH15P55291 814 aa18.53■□□□□ 0.56
CCDC28B-201ENST00000373602 ZNF718Q3SXZ3 478 aa18.53■□□□□ 0.56
CCDC28B-201ENST00000373602 UGT2A3Q6UWM9 527 aa18.53■□□□□ 0.56
CCDC28B-201ENST00000373602 UNQ6126/PRO20091Q6UXV3 157 aa18.53■□□□□ 0.56
CCDC28B-201ENST00000373602 MARS2Q96GW9 593 aaKnown RBP18.53■□□□□ 0.56
CCDC28B-201ENST00000373602 ZNF570Q96NI8 536 aa18.53■□□□□ 0.56
CCDC28B-201ENST00000373602 GPX7Q96SL4 187 aaPredicted RBP18.53■□□□□ 0.56
CCDC28B-201ENST00000373602 WACQ9BTA9 647 aa18.53■□□□□ 0.56
CCDC28B-201ENST00000373602 RACGAP1Q9H0H5 632 aa18.53■□□□□ 0.56
CCDC28B-201ENST00000373602 COL6A5A8TX70 2615 aa18.52■□□□□ 0.56
CCDC28B-201ENST00000373602 PRSS37A4D1T9 235 aa18.52■□□□□ 0.56
CCDC28B-201ENST00000373602 C12orf71A8MTZ7 269 aa18.52■□□□□ 0.56
CCDC28B-201ENST00000373602 DIRAS1O95057 198 aa18.52■□□□□ 0.56
CCDC28B-201ENST00000373602 HSD17B1P14061 328 aa18.52■□□□□ 0.56
CCDC28B-201ENST00000373602 SRD5A1P18405 259 aa18.52■□□□□ 0.56
CCDC28B-201ENST00000373602 HNF1AP20823 631 aa18.52■□□□□ 0.56
CCDC28B-201ENST00000373602 THBS2P35442 1172 aa18.52■□□□□ 0.56
CCDC28B-201ENST00000373602 CCL8P80075 99 aa18.52■□□□□ 0.56
CCDC28B-201ENST00000373602 SEC23BQ15437 767 aa18.52■□□□□ 0.56
CCDC28B-201ENST00000373602 CR1LQ2VPA4 569 aa18.52■□□□□ 0.56
CCDC28B-201ENST00000373602 GPR139Q6DWJ6 353 aa18.52■□□□□ 0.56
CCDC28B-201ENST00000373602 ZNF774Q6NX45 483 aa18.52■□□□□ 0.56
CCDC28B-201ENST00000373602 IL17RELQ6ZVW7 336 aa18.52■□□□□ 0.56
CCDC28B-201ENST00000373602 C1orf174Q8IYL3 243 aa18.52■□□□□ 0.56
CCDC28B-201ENST00000373602 RSRC1Q96IZ7 334 aaKnown RBP18.52■□□□□ 0.56
CCDC28B-201ENST00000373602 FUZQ9BT04 418 aa18.52■□□□□ 0.56
CCDC28B-201ENST00000373602 NRIP3Q9NQ35 241 aa18.52■□□□□ 0.56
CCDC28B-201ENST00000373602 FBN1P35555 2871 aaKnown RBP18.52■□□□□ 0.55
CCDC28B-201ENST00000373602 TEX13CA0A0J9YWL9 993 aa18.51■□□□□ 0.55
CCDC28B-201ENST00000373602 RNF212BA8MTL3 300 aa18.51■□□□□ 0.55
CCDC28B-201ENST00000373602 MT-ND5P03915 603 aa18.51■□□□□ 0.55
CCDC28B-201ENST00000373602 SEMG1P04279 462 aa18.51■□□□□ 0.55
CCDC28B-201ENST00000373602 CTLA4P16410 223 aa18.51■□□□□ 0.55
CCDC28B-201ENST00000373602 GCH1P30793 250 aa18.51■□□□□ 0.55
CCDC28B-201ENST00000373602 GLO1Q04760 184 aa18.51■□□□□ 0.55
CCDC28B-201ENST00000373602 KRR1Q13601 381 aaKnown RBP18.51■□□□□ 0.55
CCDC28B-201ENST00000373602 CCNIQ14094 377 aa18.51■□□□□ 0.55
CCDC28B-201ENST00000373602 SPATA46Q5T0L3 261 aa18.51■□□□□ 0.55
CCDC28B-201ENST00000373602 MBNL2Q5VZF2 373 aaKnown RBP18.51■□□□□ 0.55
CCDC28B-201ENST00000373602 THSD4Q6ZMP0 1018 aa18.51■□□□□ 0.55
CCDC28B-201ENST00000373602 RFPL4BQ6ZWI9 263 aa18.51■□□□□ 0.55
CCDC28B-201ENST00000373602 PGAM4Q8N0Y7 254 aa18.51■□□□□ 0.55
CCDC28B-201ENST00000373602 CLDND2Q8NHS1 167 aa18.51■□□□□ 0.55
CCDC28B-201ENST00000373602 SLC25A40Q8TBP6 338 aa18.51■□□□□ 0.55
CCDC28B-201ENST00000373602 GTF3AQ92664 365 aaKnown RBP18.51■□□□□ 0.55
CCDC28B-201ENST00000373602 RASD2Q96D21 266 aa18.51■□□□□ 0.55
CCDC28B-201ENST00000373602 PYURFQ96I23 114 aa18.51■□□□□ 0.55
CCDC28B-201ENST00000373602 EMC7Q9NPA0 242 aa18.51■□□□□ 0.55
CCDC28B-201ENST00000373602 CD300AQ9UGN4 299 aa18.51■□□□□ 0.55
CCDC28B-201ENST00000373602 MAGEL2Q9UJ55 1249 aa18.51■□□□□ 0.55
CCDC28B-201ENST00000373602 AURKCQ9UQB9 309 aa18.51■□□□□ 0.55
CCDC28B-201ENST00000373602 CUBNO60494 3623 aa18.5■□□□□ 0.55
CCDC28B-201ENST00000373602 PHF1O43189 567 aaPredicted RBP18.5■□□□□ 0.55
CCDC28B-201ENST00000373602 PPIHO43447 177 aaKnown RBP18.5■□□□□ 0.55
CCDC28B-201ENST00000373602 COX5BP10606 129 aa18.5■□□□□ 0.55
CCDC28B-201ENST00000373602 ITGA2P17301 1181 aa18.5■□□□□ 0.55
CCDC28B-201ENST00000373602 SDHAP31040 664 aa18.5■□□□□ 0.55
CCDC28B-201ENST00000373602 MPV17P39210 176 aa18.5■□□□□ 0.55
CCDC28B-201ENST00000373602 FXYD6P3P58550 94 aa18.5■□□□□ 0.55
CCDC28B-201ENST00000373602 GNGT1P63211 74 aa18.5■□□□□ 0.55
CCDC28B-201ENST00000373602 KRT72Q14CN4 511 aa18.5■□□□□ 0.55
CCDC28B-201ENST00000373602 TMEM255AQ5JRV8 349 aa18.5■□□□□ 0.55
CCDC28B-201ENST00000373602 PIGWQ7Z7B1 504 aa18.5■□□□□ 0.55
CCDC28B-201ENST00000373602 OR52J3Q8NH60 311 aa18.5■□□□□ 0.55
CCDC28B-201ENST00000373602 ABHD4Q8TB40 342 aa18.5■□□□□ 0.55
CCDC28B-201ENST00000373602 KLF14Q8TD94 323 aaPredicted RBP18.5■□□□□ 0.55
CCDC28B-201ENST00000373602 IPCEF1Q8WWN9 437 aaPredicted RBP18.5■□□□□ 0.55
CCDC28B-201ENST00000373602 OR2J1Q9GZK6 312 aa18.5■□□□□ 0.55
CCDC28B-201ENST00000373602 KRCC1Q9NPI7 259 aaPredicted RBP18.5■□□□□ 0.55
CCDC28B-201ENST00000373602 VSX1Q9NZR4 365 aaPredicted RBP18.5■□□□□ 0.55
CCDC28B-201ENST00000373602 TAGLN3Q9UI15 199 aa18.5■□□□□ 0.55
CCDC28B-201ENST00000373602 NDRG4Q9ULP0 352 aaKnown RBP18.5■□□□□ 0.55
CCDC28B-201ENST00000373602 ARL2BPQ9Y2Y0 163 aa18.5■□□□□ 0.55
CCDC28B-201ENST00000373602 UNC119BA6NIH7 251 aa18.49■□□□□ 0.55
CCDC28B-201ENST00000373602 H3BSA7 217 aa18.49■□□□□ 0.55
CCDC28B-201ENST00000373602 CDC14BO60729 498 aa18.49■□□□□ 0.55
CCDC28B-201ENST00000373602 NGFP01138 241 aa18.49■□□□□ 0.55
CCDC28B-201ENST00000373602 CRYBB2P43320 205 aa18.49■□□□□ 0.55
CCDC28B-201ENST00000373602 MMP15P51511 669 aa18.49■□□□□ 0.55
CCDC28B-201ENST00000373602 DVL1P1P54792 670 aaPredicted RBP18.49■□□□□ 0.55
CCDC28B-201ENST00000373602 GYS2P54840 703 aa18.49■□□□□ 0.55
CCDC28B-201ENST00000373602 PPP1CBP62140 327 aa18.49■□□□□ 0.55
CCDC28B-201ENST00000373602 TEKQ02763 1124 aa18.49■□□□□ 0.55
CCDC28B-201ENST00000373602 SCRN3Q0VDG4 424 aa18.49■□□□□ 0.55
CCDC28B-201ENST00000373602 SAMD4BQ5PRF9 694 aaKnown RBP18.49■□□□□ 0.55
CCDC28B-201ENST00000373602 DPY19L2P2Q6ZN68 376 aa18.49■□□□□ 0.55
CCDC28B-201ENST00000373602 TMEM158Q8WZ71 300 aa18.49■□□□□ 0.55
CCDC28B-201ENST00000373602 C4orf45Q96LM5 186 aa18.49■□□□□ 0.55
CCDC28B-201ENST00000373602 CDRT15Q96T59 188 aa18.49■□□□□ 0.55
CCDC28B-201ENST00000373602 GPA33Q99795 319 aa18.49■□□□□ 0.55
CCDC28B-201ENST00000373602 SYT4Q9H2B2 425 aa18.49■□□□□ 0.55
CCDC28B-201ENST00000373602 NARFLQ9H6Q4 476 aa18.49■□□□□ 0.55
CCDC28B-201ENST00000373602 ELOVL3Q9HB03 270 aa18.49■□□□□ 0.55
CCDC28B-201ENST00000373602 ARL8BQ9NVJ2 186 aa18.49■□□□□ 0.55
CCDC28B-201ENST00000373602 TMEFF2Q9UIK5 374 aaPredicted RBP18.49■□□□□ 0.55
CCDC28B-201ENST00000373602 IER3IP1Q9Y5U9 82 aa18.49■□□□□ 0.55
CCDC28B-201ENST00000373602 V9GYQ6 96 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms