RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 RBM39Q14498 530 aaKnown RBP4.37□□□□□ -1.71
CSMD3-203ENST00000343508 INPP5JQ15735 1006 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-203ENST00000343508 NPSR1Q6W5P4 371 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 TMEM156Q8N614 296 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 METTL27Q8N6F8 245 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-203ENST00000343508 MORN4Q8NDC4 146 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 RSC1A1Q92681 617 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 RNF170Q96K19 258 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 INSM2Q96T92 566 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-203ENST00000343508 GHITMQ9H3K2 345 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 MARCH5Q9NX47 278 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 SIGLEC7Q9Y286 467 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 URGCP-MRPS24S4R325 110 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 TMEM235A6NFC5 223 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 C17orf112F2Z3M2 114 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 RNASEK-C17orf49H0YIS7 233 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 RAC2P15153 192 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 ZNF28P17035 718 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 IGFBP6P24592 240 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-203ENST00000343508 ABCD3P28288 659 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 TAF9Q16594 264 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 MUC20Q8N307 709 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-203ENST00000343508 ARIH2OSQ8N7S6 290 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 PTP4A1Q93096 173 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 SLC35A4Q96G79 324 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 OR10A5Q9H207 317 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 LINC00597Q9H2U6 94 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 DNAJC5Q9H3Z4 198 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 C19orf53Q9UNZ5 99 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-203ENST00000343508 CDK2AP1O14519 115 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 SERPINE2P07093 398 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 HOXC8P31273 242 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 KCNJ3P48549 501 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 TRMT12Q53H54 448 aaKnown RBP4.37□□□□□ -1.71
CSMD3-203ENST00000343508 USP53Q70EK8 1073 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 PRSS58Q8IYP2 241 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 MYEOVQ96EZ4 313 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 LCORQ96JN0 433 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-203ENST00000343508 NPAS1Q99742 590 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 GPR174Q9BXC1 333 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 NMES1Q9C002 83 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 OPN4Q9UHM6 478 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 ZNF107Q9UII5 783 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-203ENST00000343508 KCNS2Q9ULS6 477 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 ZNF705FA8MVS1 300 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-203ENST00000343508 NME2P1O60361 137 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 ZNF705DP0CH99 300 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-203ENST00000343508 ZNF705BP0CI00 300 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-203ENST00000343508 HNRNPA2B1P22626 353 aaKnown RBP4.37□□□□□ -1.71
CSMD3-203ENST00000343508 CASRP41180 1078 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 SQSTM1Q13501 440 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 NHLRC3Q5JS37 347 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 KIAA0907Q7Z7F0 614 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-203ENST00000343508 LGI3Q8N145 548 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 FAM181AQ8N9Y4 354 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 OR51Q1Q8NH59 317 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 DIO2Q92813 273 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 RELTQ969Z4 430 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 TVP23CQ96ET8 276 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 OCSTAMPQ9BR26 566 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 PLEK2Q9NYT0 353 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 DSPPQ9NZW4 1301 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 BRWD3Q6RI45 1802 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 LOC102725191A0A1B0GVB3 256 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 TMPRSS11DO60235 418 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 PRKRAO75569 313 aaKnown RBP4.37□□□□□ -1.71
CSMD3-203ENST00000343508 GLSO94925 669 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-203ENST00000343508 PLP2Q04941 152 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 C17orf67Q0P5P2 114 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 AGERQ15109 404 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 YOD1Q5VVQ6 348 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-203ENST00000343508 FAHD2BQ6P2I3 314 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-203ENST00000343508 OR13C9Q8NGT0 318 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 KLHDC7BQ96G42 594 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 FAHD2AQ96GK7 314 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 ELF4Q99607 663 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-203ENST00000343508 PAPOLGQ9BWT3 736 aaKnown RBP4.37□□□□□ -1.71
CSMD3-203ENST00000343508 ULBP3Q9BZM4 244 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 SPACA1Q9HBV2 294 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 HCFC1R1Q9NWW0 138 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 F5H5K5 113 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 CTAG2O75638 210 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 KLK3P07288 261 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-203ENST00000343508 ZNF728P0DKX0 622 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 CBR1P16152 277 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 RPL27P61353 136 aaKnown RBP4.37□□□□□ -1.71
CSMD3-203ENST00000343508 SFRP5Q5T4F7 317 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 ANKRD16Q6P6B7 361 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 TMEM151BQ8IW70 566 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 ARRDC1Q8N5I2 433 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 TMED6Q8WW62 240 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 EMG1Q92979 244 aaKnown RBP4.37□□□□□ -1.71
CSMD3-203ENST00000343508 Q96M85 177 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 S1PR5Q9H228 398 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 SFXN1Q9H9B4 322 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 BHLHE40O14503 412 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 H2AFB1P0C5Y9 115 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 LAP3P28838 519 aa4.37□□□□□ -1.71
CSMD3-203ENST00000343508 POU3F1Q03052 451 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-203ENST00000343508 ZP2Q05996 745 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms