RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 ALKBH3Q96Q83 286 aaPredicted RBP3.66□□□□□ -1.82
MCF2-201ENST00000338585 KCNS3Q9BQ31 491 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 TTYH2Q9BSA4 534 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 CDADC1Q9BWV3 514 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 ULBP2Q9BZM5 246 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 TIGARQ9NQ88 270 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 FRRS1LQ9P0K9 344 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 KLHL9Q9P2J3 617 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 FOXD3Q9UJU5 478 aaPredicted RBP3.66□□□□□ -1.82
MCF2-201ENST00000338585 LRP12Q9Y561 859 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 LHFPL6Q9Y693 200 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 TMEM14AQ9Y6G1 99 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 ANKRD11Q6UB99 2663 aaPredicted RBP3.66□□□□□ -1.82
MCF2-201ENST00000338585 SVILO95425 2214 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 FREM1Q5H8C1 2179 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 CENPBD1B2RD01 187 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 RER1O15258 196 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 DHHO43323 396 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 SC5DO75845 299 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 SULT1C4O75897 302 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 RGS9O75916 674 aaPredicted RBP3.66□□□□□ -1.82
MCF2-201ENST00000338585 SYNGR4O95473 234 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 TGM6O95932 706 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 ACTL6AO96019 429 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 ANOS1P23352 680 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 KIR3DL2P43630 455 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 BMXP51813 675 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 ROM1Q03395 351 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 GPR50Q13585 617 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 ZNF169Q14929 603 aaPredicted RBP3.66□□□□□ -1.82
MCF2-201ENST00000338585 SGCAQ16586 387 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 WDR38Q5JTN6 314 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 PDSS1Q5T2R2 415 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 RPL22L1Q6P5R6 122 aaKnown RBP3.66□□□□□ -1.82
MCF2-201ENST00000338585 IGFL3Q6UXB1 125 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 FAM220AQ7Z4H9 259 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 CEACAM19Q7Z692 300 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 KRT77Q7Z794 578 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 SYT9Q86SS6 491 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 NR2C2APQ86WQ0 139 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 TUSC5Q8IXB3 177 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 ZNF679Q8IYX0 411 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 PRSS35Q8N3Z0 413 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 RBMXL3Q8N7X1 1067 aaKnown RBP3.66□□□□□ -1.82
MCF2-201ENST00000338585 OR10H5Q8NGA6 315 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 OR2G2Q8NGZ5 317 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 OR10AC1Q8NH08 325 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 RPS4Y2Q8TD47 263 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 EXTL1Q92935 676 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 MRPL48Q96GC5 212 aaKnown RBP3.66□□□□□ -1.82
MCF2-201ENST00000338585 KCTD7Q96MP8 289 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 OR14A2Q96R54 314 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 MYCBPQ99417 103 aaPredicted RBP3.66□□□□□ -1.82
MCF2-201ENST00000338585 MNTQ99583 582 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 ZNF416Q9BWM5 594 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 RBM24Q9BX46 236 aaKnown RBP3.66□□□□□ -1.82
MCF2-201ENST00000338585 CALHM2Q9HA72 323 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 CRLF2Q9HC73 371 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 POLE4Q9NR33 117 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 CENPMQ9NSP4 180 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 ASH2LQ9UBL3 628 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 CYB5R1Q9UHQ9 305 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 GTF2A1LQ9UNN4 478 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 CAMK2AQ9UQM7 478 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 SLC22A13Q9Y226 551 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 POLR1DQ9Y2S0 133 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 RAXQ9Y2V3 346 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 PTPRQQ9UMZ3 2332 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 PIEZO1Q92508 2521 aa3.66□□□□□ -1.82
MCF2-201ENST00000338585 NCOA6Q14686 2063 aaPredicted RBP3.65□□□□□ -1.82
MCF2-201ENST00000338585 RTTNQ86VV8 2226 aa3.65□□□□□ -1.82
MCF2-201ENST00000338585 IGKV3D-15A0A087WSY6 115 aa3.65□□□□□ -1.82
MCF2-201ENST00000338585 ACOD1A6NK06 481 aa3.65□□□□□ -1.82
MCF2-201ENST00000338585 OR4C45A6NMZ5 311 aa3.65□□□□□ -1.82
MCF2-201ENST00000338585 J3QRK9 145 aa3.65□□□□□ -1.82
MCF2-201ENST00000338585 PHYHO14832 338 aa3.65□□□□□ -1.82
MCF2-201ENST00000338585 SLC43A1O75387 559 aa3.65□□□□□ -1.82
MCF2-201ENST00000338585 IGHG3P01860 377 aa3.65□□□□□ -1.82
MCF2-201ENST00000338585 HRGP04196 525 aa3.65□□□□□ -1.82
MCF2-201ENST00000338585 INHBBP09529 407 aa3.65□□□□□ -1.82
MCF2-201ENST00000338585 TACSTD2P09758 323 aa3.65□□□□□ -1.82
MCF2-201ENST00000338585 CALRP27797 417 aaKnown RBP3.65□□□□□ -1.82
MCF2-201ENST00000338585 ZNF133P52736 654 aaPredicted RBP3.65□□□□□ -1.82
MCF2-201ENST00000338585 FOXG1P55316 489 aaPredicted RBP3.65□□□□□ -1.82
MCF2-201ENST00000338585 TUBA1BP68363 451 aa3.65□□□□□ -1.82
MCF2-201ENST00000338585 ROR2Q01974 943 aaKnown RBP3.65□□□□□ -1.82
MCF2-201ENST00000338585 HNRNPA0Q13151 305 aaKnown RBP3.65□□□□□ -1.82
MCF2-201ENST00000338585 ALKBH1Q13686 389 aaKnown RBP3.65□□□□□ -1.82
MCF2-201ENST00000338585 ENDOGQ14249 297 aaKnown RBP3.65□□□□□ -1.82
MCF2-201ENST00000338585 BCL2A1Q16548 175 aa3.65□□□□□ -1.82
MCF2-201ENST00000338585 PLEKHN1Q494U1 663 aaPredicted RBP3.65□□□□□ -1.82
MCF2-201ENST00000338585 ZNF404Q494X3 552 aa3.65□□□□□ -1.82
MCF2-201ENST00000338585 CCDC58Q4VC31 144 aa3.65□□□□□ -1.82
MCF2-201ENST00000338585 ACSM3Q53FZ2 586 aa3.65□□□□□ -1.82
MCF2-201ENST00000338585 TEX30Q5JUR7 227 aa3.65□□□□□ -1.82
MCF2-201ENST00000338585 C10orf128Q5T292 105 aa3.65□□□□□ -1.82
MCF2-201ENST00000338585 TSPO2Q5TGU0 170 aa3.65□□□□□ -1.82
MCF2-201ENST00000338585 Q6ZS92 163 aa3.65□□□□□ -1.82
MCF2-201ENST00000338585 TUBA1AQ71U36 451 aa3.65□□□□□ -1.82
MCF2-201ENST00000338585 KCTD20Q7Z5Y7 419 aa3.65□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms