RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 TMEM100Q9NV29 134 aa12.16□□□□□ -0.46
CCDC88C-201ENST00000331194 RNASEK-C17orf49H0YIS7 233 aa12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 PRKNO60260 465 aaPredicted RBP12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 SRPX2O60687 465 aaPredicted RBP12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 CYB5AP00167 134 aa12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 SERPINA5P05154 406 aa12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 OR8U8P0C7N1 319 aa12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 TPT1P13693 172 aaKnown RBP12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 ZNF14P17017 642 aaPredicted RBP12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 NME2P22392 152 aa12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 ZBTB25P24278 435 aa12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 HGFACQ04756 655 aa12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 RUNX2Q13950 521 aa12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 IRF4Q15306 451 aa12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 CDNFQ49AH0 187 aa12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 ANKRD33Q7Z3H0 272 aa12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 OR2L3Q8NG85 312 aa12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 SMARCD2Q92925 531 aa12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 FOXRED1Q96CU9 486 aaPredicted RBP12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 RNF126Q9BV68 326 aa12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 TBX21Q9UL17 535 aa12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 A0A1B0GTQ1 180 aa12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 C9orf170A2RU37 121 aa12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 DCDC2BA2VCK2 349 aa12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 METTL21EPA6NDL7 271 aa12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 VEGFDO43915 354 aa12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 GLCEO94923 617 aa12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 RAB28P51157 221 aa12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 CASP6P55212 293 aa12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 DEFA6Q01524 100 aa12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 NNATQ16517 81 aa12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 FCRL6Q6DN72 434 aa12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 SKA3Q8IX90 412 aa12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 TMEM52Q8NDY8 209 aa12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 OR52E1Q8NGJ3 308 aa12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 OR6N2Q8NGY6 317 aa12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 MRI1Q9BV20 369 aa12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 CHMP1AQ9HD42 196 aaPredicted RBP12.15□□□□□ -0.46
CCDC88C-201ENST00000331194 A0A1W2PPH5 198 aa12.15□□□□□ -0.47
CCDC88C-201ENST00000331194 SOX1O00570 391 aaPredicted RBP12.15□□□□□ -0.47
CCDC88C-201ENST00000331194 ABHD16AO95870 558 aa12.15□□□□□ -0.47
CCDC88C-201ENST00000331194 ERCC1P07992 297 aaPredicted RBP12.15□□□□□ -0.47
CCDC88C-201ENST00000331194 SNRNP70P08621 437 aaKnown RBP12.15□□□□□ -0.47
CCDC88C-201ENST00000331194 ADRB3P13945 408 aa12.15□□□□□ -0.47
CCDC88C-201ENST00000331194 SERPINF1P36955 418 aa12.15□□□□□ -0.47
CCDC88C-201ENST00000331194 LPAR6P43657 344 aa12.15□□□□□ -0.47
CCDC88C-201ENST00000331194 RAB11BQ15907 218 aa12.15□□□□□ -0.47
CCDC88C-201ENST00000331194 TCEAL5Q5H9L2 206 aa12.15□□□□□ -0.47
CCDC88C-201ENST00000331194 DHRS11Q6UWP2 260 aa12.15□□□□□ -0.47
CCDC88C-201ENST00000331194 PRSS41Q7RTY9 318 aa12.15□□□□□ -0.47
CCDC88C-201ENST00000331194 PARGQ86W56 976 aa12.15□□□□□ -0.47
CCDC88C-201ENST00000331194 RHOVQ96L33 236 aa12.15□□□□□ -0.47
CCDC88C-201ENST00000331194 SLC25A21Q9BQT8 299 aaPredicted RBP12.15□□□□□ -0.47
CCDC88C-201ENST00000331194 NMNAT2Q9BZQ4 307 aa12.15□□□□□ -0.47
CCDC88C-201ENST00000331194 KCNG2Q9UJ96 466 aa12.15□□□□□ -0.47
CCDC88C-201ENST00000331194 ATG2BQ96BY7 2078 aa12.14□□□□□ -0.47
CCDC88C-201ENST00000331194 LRG1P02750 347 aa12.14□□□□□ -0.47
CCDC88C-201ENST00000331194 RCC1P18754 421 aaPredicted RBP12.14□□□□□ -0.47
CCDC88C-201ENST00000331194 KIR3DL2P43630 455 aa12.14□□□□□ -0.47
CCDC88C-201ENST00000331194 GLYATL3Q5SZD4 288 aa12.14□□□□□ -0.47
CCDC88C-201ENST00000331194 ALKBH2Q6NS38 261 aa12.14□□□□□ -0.47
CCDC88C-201ENST00000331194 ADAM5Q6NVV9 412 aa12.14□□□□□ -0.47
CCDC88C-201ENST00000331194 ZNF585AQ6P3V2 769 aa12.14□□□□□ -0.47
CCDC88C-201ENST00000331194 SLC35D2Q76EJ3 337 aa12.14□□□□□ -0.47
CCDC88C-201ENST00000331194 VN1R4Q7Z5H5 301 aa12.14□□□□□ -0.47
CCDC88C-201ENST00000331194 LYG2Q86SG7 212 aa12.14□□□□□ -0.47
CCDC88C-201ENST00000331194 ACBD4Q8NC06 268 aa12.14□□□□□ -0.47
CCDC88C-201ENST00000331194 SECTM1Q8WVN6 248 aa12.14□□□□□ -0.47
CCDC88C-201ENST00000331194 ZDHHC12Q96GR4 267 aa12.14□□□□□ -0.47
CCDC88C-201ENST00000331194 SMCO4Q9NRQ5 59 aa12.14□□□□□ -0.47
CCDC88C-201ENST00000331194 GON4LQ3T8J9 2241 aa12.14□□□□□ -0.47
CCDC88C-201ENST00000331194 TRBV5-7A0A0A0MS05 114 aa12.14□□□□□ -0.47
CCDC88C-201ENST00000331194 C1QTNF3-AMACRE9PGA6 284 aa12.14□□□□□ -0.47
CCDC88C-201ENST00000331194 CDC40O60508 579 aaKnown RBP eCLIP12.14□□□□□ -0.47
CCDC88C-201ENST00000331194 PLGP00747 810 aaPredicted RBP12.14□□□□□ -0.47
CCDC88C-201ENST00000331194 TACSTD2P09758 323 aa12.14□□□□□ -0.47
CCDC88C-201ENST00000331194 PSMB6P28072 239 aa12.14□□□□□ -0.47
CCDC88C-201ENST00000331194 ACTBP60709 375 aa12.14□□□□□ -0.47
CCDC88C-201ENST00000331194 ACTG1P63261 375 aa12.14□□□□□ -0.47
CCDC88C-201ENST00000331194 DMWDQ09019 674 aa12.14□□□□□ -0.47
CCDC88C-201ENST00000331194 SSX9Q7RTT3 188 aa12.14□□□□□ -0.47
CCDC88C-201ENST00000331194 SLC30A7Q8NEW0 376 aa12.14□□□□□ -0.47
CCDC88C-201ENST00000331194 ZNF417Q8TAU3 575 aa12.14□□□□□ -0.47
CCDC88C-201ENST00000331194 ZNF426Q9BUY5 554 aa12.14□□□□□ -0.47
CCDC88C-201ENST00000331194 UFSP2Q9NUQ7 469 aa12.14□□□□□ -0.47
CCDC88C-201ENST00000331194 MRPS18BQ9Y676 258 aaKnown RBP12.14□□□□□ -0.47
CCDC88C-201ENST00000331194 TRBV23OR9-2A0A075B6M9 112 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 LOC100289279A0A1B0GTE1 492 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 IGLON5A6NGN9 336 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 HIDE1A8MVS5 230 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 ARG1P05089 322 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 FBP1P09467 338 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 CDK3Q00526 305 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 WDR38Q5JTN6 314 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 C10orf53Q8N6V4 93 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 WDSUB1Q8N9V3 476 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 TMEM229BQ8NBD8 167 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 OR51A2Q8NGJ7 313 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 GPR148Q8TDV2 347 aa12.13□□□□□ -0.47
CCDC88C-201ENST00000331194 SEC61A2Q9H9S3 476 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms