RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 OR5V1Q9UGF6 321 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 EGFL7Q9UHF1 273 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 IL20RAQ9UHF4 553 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 TIMM10BQ9Y5J6 103 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 INSIG2Q9Y5U4 225 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 DOCK11Q5JSL3 2073 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 WNK1Q9H4A3 2382 aa12.47□□□□□ -0.41
CCDC88B-201ENST00000301897 A0A1B0GUS0 222 aa12.46□□□□□ -0.41
CCDC88B-201ENST00000301897 IFNL4K9M1U5 179 aa12.46□□□□□ -0.41
CCDC88B-201ENST00000301897 OR7A10O76100 309 aa12.46□□□□□ -0.41
CCDC88B-201ENST00000301897 SLC2A10O95528 541 aa12.46□□□□□ -0.41
CCDC88B-201ENST00000301897 CST2P09228 141 aa12.46□□□□□ -0.41
CCDC88B-201ENST00000301897 FUT1P19526 365 aa12.46□□□□□ -0.41
CCDC88B-201ENST00000301897 CDAP32320 146 aa12.46□□□□□ -0.41
CCDC88B-201ENST00000301897 SLC6A9P48067 706 aa12.46□□□□□ -0.41
CCDC88B-201ENST00000301897 IDH3AP50213 366 aa12.46□□□□□ -0.41
CCDC88B-201ENST00000301897 ARMC4Q5T2S8 1044 aa12.46□□□□□ -0.41
CCDC88B-201ENST00000301897 C9orf139Q6ZV77 190 aa12.46□□□□□ -0.41
CCDC88B-201ENST00000301897 RFPL4BQ6ZWI9 263 aa12.46□□□□□ -0.41
CCDC88B-201ENST00000301897 LRRC28Q86X40 367 aaPredicted RBP12.46□□□□□ -0.41
CCDC88B-201ENST00000301897 MUC20Q8N307 709 aaPredicted RBP12.46□□□□□ -0.41
CCDC88B-201ENST00000301897 NPEPL1Q8NDH3 523 aa12.46□□□□□ -0.41
CCDC88B-201ENST00000301897 AKR7LQ8NHP1 331 aa12.46□□□□□ -0.41
CCDC88B-201ENST00000301897 LIPHQ8WWY8 451 aa12.46□□□□□ -0.41
CCDC88B-201ENST00000301897 SGTBQ96EQ0 304 aa12.46□□□□□ -0.41
CCDC88B-201ENST00000301897 DUX5Q96PT3 197 aa12.46□□□□□ -0.41
CCDC88B-201ENST00000301897 RBP7Q96R05 134 aa12.46□□□□□ -0.41
CCDC88B-201ENST00000301897 WACQ9BTA9 647 aa12.46□□□□□ -0.41
CCDC88B-201ENST00000301897 ALG12Q9BV10 488 aa12.46□□□□□ -0.41
CCDC88B-201ENST00000301897 OR2H1Q9GZK4 316 aa12.46□□□□□ -0.41
CCDC88B-201ENST00000301897 MEPEQ9NQ76 525 aaPredicted RBP12.46□□□□□ -0.41
CCDC88B-201ENST00000301897 MMP26Q9NRE1 261 aa12.46□□□□□ -0.41
CCDC88B-201ENST00000301897 LRCH1Q9Y2L9 728 aa12.46□□□□□ -0.41
CCDC88B-201ENST00000301897 UGT2A1Q9Y4X1 527 aa12.46□□□□□ -0.41
CCDC88B-201ENST00000301897 TRAPPC2LH3BP13 241 aa12.45□□□□□ -0.42
CCDC88B-201ENST00000301897 TSPAN19P0C672 248 aa12.45□□□□□ -0.42
CCDC88B-201ENST00000301897 PCGF2P35227 344 aa12.45□□□□□ -0.42
CCDC88B-201ENST00000301897 MDH2P40926 338 aaKnown RBP12.45□□□□□ -0.42
CCDC88B-201ENST00000301897 AQP2P41181 271 aa12.45□□□□□ -0.42
CCDC88B-201ENST00000301897 BTG1P62324 171 aa12.45□□□□□ -0.42
CCDC88B-201ENST00000301897 ERVK-25P63136 954 aa12.45□□□□□ -0.42
CCDC88B-201ENST00000301897 MIDNQ504T8 468 aa12.45□□□□□ -0.42
CCDC88B-201ENST00000301897 TMEM255AQ5JRV8 349 aa12.45□□□□□ -0.42
CCDC88B-201ENST00000301897 KLF17Q5JT82 389 aaPredicted RBP12.45□□□□□ -0.42
CCDC88B-201ENST00000301897 FAM205BPQ63HN1 556 aa12.45□□□□□ -0.42
CCDC88B-201ENST00000301897 DHDDSQ86SQ9 333 aa12.45□□□□□ -0.42
CCDC88B-201ENST00000301897 SYT9Q86SS6 491 aa12.45□□□□□ -0.42
CCDC88B-201ENST00000301897 RBM45Q8IUH3 476 aaKnown RBP12.45□□□□□ -0.42
CCDC88B-201ENST00000301897 DPP10Q8N608 796 aa12.45□□□□□ -0.42
CCDC88B-201ENST00000301897 OR52E2Q8NGJ4 325 aa12.45□□□□□ -0.42
CCDC88B-201ENST00000301897 NMD3Q96D46 503 aaKnown RBP12.45□□□□□ -0.42
CCDC88B-201ENST00000301897 C4orf45Q96LM5 186 aa12.45□□□□□ -0.42
CCDC88B-201ENST00000301897 C1orf147Q96MC9 270 aaPredicted RBP12.45□□□□□ -0.42
CCDC88B-201ENST00000301897 COG8Q96MW5 612 aa12.45□□□□□ -0.42
CCDC88B-201ENST00000301897 DCLRE1CQ96SD1 692 aaKnown RBP12.45□□□□□ -0.42
CCDC88B-201ENST00000301897 CGREF1Q99674 301 aa12.45□□□□□ -0.42
CCDC88B-201ENST00000301897 PRSS27Q9BQR3 290 aa12.45□□□□□ -0.42
CCDC88B-201ENST00000301897 EBF4Q9BQW3 602 aa12.45□□□□□ -0.42
CCDC88B-201ENST00000301897 WNT5BQ9H1J7 359 aa12.45□□□□□ -0.42
CCDC88B-201ENST00000301897 TXNIPQ9H3M7 391 aa12.45□□□□□ -0.42
CCDC88B-201ENST00000301897 NANOGQ9H9S0 305 aa12.45□□□□□ -0.42
CCDC88B-201ENST00000301897 MSL2Q9HCI7 577 aa12.45□□□□□ -0.42
CCDC88B-201ENST00000301897 NDRG4Q9ULP0 352 aaKnown RBP12.45□□□□□ -0.42
CCDC88B-201ENST00000301897 MMP24Q9Y5R2 645 aa12.45□□□□□ -0.42
CCDC88B-201ENST00000301897 HTR3EA5X5Y0 456 aa12.44□□□□□ -0.42
CCDC88B-201ENST00000301897 F5H0A9 414 aaPredicted RBP12.44□□□□□ -0.42
CCDC88B-201ENST00000301897 ABHD16AO95870 558 aa12.44□□□□□ -0.42
CCDC88B-201ENST00000301897 PSG7Q13046 419 aa12.44□□□□□ -0.42
CCDC88B-201ENST00000301897 SLC9A3R2Q15599 337 aa12.44□□□□□ -0.42
CCDC88B-201ENST00000301897 LEG1Q6P5S2 330 aa12.44□□□□□ -0.42
CCDC88B-201ENST00000301897 SLC25A47Q6Q0C1 308 aa12.44□□□□□ -0.42
CCDC88B-201ENST00000301897 BTNL3Q6UXE8 466 aa12.44□□□□□ -0.42
CCDC88B-201ENST00000301897 TSPYL5Q86VY4 417 aaPredicted RBP12.44□□□□□ -0.42
CCDC88B-201ENST00000301897 BCL6BQ8N143 479 aaPredicted RBP12.44□□□□□ -0.42
CCDC88B-201ENST00000301897 OR4D11Q8NGI4 311 aa12.44□□□□□ -0.42
CCDC88B-201ENST00000301897 NSMAFQ92636 917 aa12.44□□□□□ -0.42
CCDC88B-201ENST00000301897 THOC1Q96FV9 657 aaKnown RBP12.44□□□□□ -0.42
CCDC88B-201ENST00000301897 MAGEB18Q96M61 343 aa12.44□□□□□ -0.42
CCDC88B-201ENST00000301897 C1QTNF5Q9BXJ0 243 aa12.44□□□□□ -0.42
CCDC88B-201ENST00000301897 KAT8Q9H7Z6 458 aaKnown RBP12.44□□□□□ -0.42
CCDC88B-201ENST00000301897 TMBIM4Q9HC24 238 aa12.44□□□□□ -0.42
CCDC88B-201ENST00000301897 TBCCD1Q9NVR7 557 aa12.44□□□□□ -0.42
CCDC88B-201ENST00000301897 IL19Q9UHD0 177 aa12.44□□□□□ -0.42
CCDC88B-201ENST00000301897 PPP1R3CQ9UQK1 317 aa12.44□□□□□ -0.42
CCDC88B-201ENST00000301897 A0A0G2JK05 382 aa12.43□□□□□ -0.42
CCDC88B-201ENST00000301897 C12orf71A8MTZ7 269 aa12.43□□□□□ -0.42
CCDC88B-201ENST00000301897 OR5F1O95221 314 aa12.43□□□□□ -0.42
CCDC88B-201ENST00000301897 NGFP01138 241 aa12.43□□□□□ -0.42
CCDC88B-201ENST00000301897 COX5BP10606 129 aa12.43□□□□□ -0.42
CCDC88B-201ENST00000301897 THRBP10828 461 aa12.43□□□□□ -0.42
CCDC88B-201ENST00000301897 KITLGP21583 273 aa12.43□□□□□ -0.42
CCDC88B-201ENST00000301897 LAP3P28838 519 aa12.43□□□□□ -0.42
CCDC88B-201ENST00000301897 TAS2R41P59536 307 aa12.43□□□□□ -0.42
CCDC88B-201ENST00000301897 PAX8Q06710 450 aa12.43□□□□□ -0.42
CCDC88B-201ENST00000301897 FMODQ06828 376 aa12.43□□□□□ -0.42
CCDC88B-201ENST00000301897 ZMYND11Q15326 602 aa12.43□□□□□ -0.42
CCDC88B-201ENST00000301897 ZNF362Q5T0B9 420 aaPredicted RBP12.43□□□□□ -0.42
CCDC88B-201ENST00000301897 C16orf87Q6PH81 154 aa12.43□□□□□ -0.42
CCDC88B-201ENST00000301897 LRRN1Q6UXK5 716 aa12.43□□□□□ -0.42
CCDC88B-201ENST00000301897 PARP8Q8N3A8 854 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms