RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 OR52W1Q6IF63 320 aa12.63□□□□□ -0.39
USH1C-201ENST00000005226 ARMC6Q6NXE6 501 aa12.63□□□□□ -0.39
USH1C-201ENST00000005226 TMEM88Q6PEY1 159 aa12.63□□□□□ -0.39
USH1C-201ENST00000005226 OR2W3Q7Z3T1 314 aa12.63□□□□□ -0.39
USH1C-201ENST00000005226 ASB5Q8WWX0 329 aa12.63□□□□□ -0.39
USH1C-201ENST00000005226 SLC41A2Q96JW4 573 aa12.63□□□□□ -0.39
USH1C-201ENST00000005226 MAP3K3Q99759 626 aa12.63□□□□□ -0.39
USH1C-201ENST00000005226 C1orf198Q9H425 327 aa12.63□□□□□ -0.39
USH1C-201ENST00000005226 GLS2Q9UI32 602 aa12.63□□□□□ -0.39
USH1C-201ENST00000005226 VSIG4Q9Y279 399 aa12.63□□□□□ -0.39
USH1C-201ENST00000005226 YBX2Q9Y2T7 364 aaKnown RBP12.63□□□□□ -0.39
USH1C-201ENST00000005226 SLCO1B1Q9Y6L6 691 aa12.63□□□□□ -0.39
USH1C-201ENST00000005226 KIF26BQ2KJY2 2108 aa12.62□□□□□ -0.39
USH1C-201ENST00000005226 CLDN4O14493 209 aa12.62□□□□□ -0.39
USH1C-201ENST00000005226 HLA-AP01891 365 aaKnown RBP12.62□□□□□ -0.39
USH1C-201ENST00000005226 CTLA4P16410 223 aa12.62□□□□□ -0.39
USH1C-201ENST00000005226 MGMTP16455 207 aa12.62□□□□□ -0.39
USH1C-201ENST00000005226 HTR2CP28335 458 aa12.62□□□□□ -0.39
USH1C-201ENST00000005226 CAPZA1P52907 286 aa12.62□□□□□ -0.39
USH1C-201ENST00000005226 HHEXQ03014 270 aa12.62□□□□□ -0.39
USH1C-201ENST00000005226 ZNF169Q14929 603 aaPredicted RBP12.62□□□□□ -0.39
USH1C-201ENST00000005226 ACKR1Q16570 336 aa12.62□□□□□ -0.39
USH1C-201ENST00000005226 FAM166AQ6J272 317 aa12.62□□□□□ -0.39
USH1C-201ENST00000005226 CASTOR1Q8WTX7 329 aa12.62□□□□□ -0.39
USH1C-201ENST00000005226 SLC25A44Q96H78 314 aaPredicted RBP12.62□□□□□ -0.39
USH1C-201ENST00000005226 ARID1AO14497 2285 aa12.62□□□□□ -0.39
USH1C-201ENST00000005226 A0A1W2PPC1 479 aa12.62□□□□□ -0.39
USH1C-201ENST00000005226 WIPF3A6NGB9 483 aa12.62□□□□□ -0.39
USH1C-201ENST00000005226 ZNF736B4DX44 427 aaPredicted RBP12.62□□□□□ -0.39
USH1C-201ENST00000005226 XKRYO14609 159 aa12.62□□□□□ -0.39
USH1C-201ENST00000005226 ICOSLGO75144 302 aa12.62□□□□□ -0.39
USH1C-201ENST00000005226 SLC25A12O75746 678 aa12.62□□□□□ -0.39
USH1C-201ENST00000005226 HOXC4P09017 264 aaPredicted RBP12.62□□□□□ -0.39
USH1C-201ENST00000005226 POU2F2P09086 479 aa12.62□□□□□ -0.39
USH1C-201ENST00000005226 SKP1P63208 163 aa12.62□□□□□ -0.39
USH1C-201ENST00000005226 ADAM8P78325 824 aa12.62□□□□□ -0.39
USH1C-201ENST00000005226 INSM1Q01101 510 aaPredicted RBP12.62□□□□□ -0.39
USH1C-201ENST00000005226 FAM219AQ8IW50 185 aa12.62□□□□□ -0.39
USH1C-201ENST00000005226 C19orf47Q8N9M1 422 aaKnown RBP12.62□□□□□ -0.39
USH1C-201ENST00000005226 PPP1R1CQ8WVI7 109 aa12.62□□□□□ -0.39
USH1C-201ENST00000005226 METTL21AQ8WXB1 218 aa12.62□□□□□ -0.39
USH1C-201ENST00000005226 FAM46BQ96A09 425 aa12.62□□□□□ -0.39
USH1C-201ENST00000005226 GABRG3Q99928 467 aa12.62□□□□□ -0.39
USH1C-201ENST00000005226 ZNF416Q9BWM5 594 aa12.62□□□□□ -0.39
USH1C-201ENST00000005226 SLC25A32Q9H2D1 315 aa12.62□□□□□ -0.39
USH1C-201ENST00000005226 SEMA6CQ9H3T2 930 aa12.62□□□□□ -0.39
USH1C-201ENST00000005226 TMED7Q9Y3B3 224 aa12.62□□□□□ -0.39
USH1C-201ENST00000005226 TMEM14AQ9Y6G1 99 aa12.62□□□□□ -0.39
USH1C-201ENST00000005226 KANTRA0A1W2PQU2 76 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 TMEM127O75204 238 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 TNFRSF4P43489 277 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 ZNF117Q03924 483 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 PMPCAQ10713 525 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 EIF2B1Q14232 305 aaKnown RBP12.61□□□□□ -0.39
USH1C-201ENST00000005226 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.61□□□□□ -0.39
USH1C-201ENST00000005226 GLT8D1Q68CQ7 371 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 TMEM92Q6UXU6 159 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 KCTD9Q7L273 389 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 EIF4E3Q8N5X7 224 aaKnown RBP12.61□□□□□ -0.39
USH1C-201ENST00000005226 CCDC107Q8WV48 283 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 ZBTB8AQ96BR9 441 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 PCDHB16Q9NRJ7 776 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 MRPS33Q9Y291 106 aaKnown RBP12.61□□□□□ -0.39
USH1C-201ENST00000005226 EMC9Q9Y3B6 208 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 EEF1E1-BLOC1S5C9J1V9 151 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 GPR31O00270 319 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 CYB5AP00167 134 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 TNFP01375 233 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 CXCR1P25024 350 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 DLSTP36957 453 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 ACTBP60709 375 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 ACTG1P63261 375 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 CXADRP78310 365 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 BIKQ13323 160 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 OR7A5Q15622 319 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 PRTGQ2VWP7 1150 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 CDNFQ49AH0 187 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 LINC00346Q8IVM7 164 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 ZNF679Q8IYX0 411 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 TMEM229BQ8NBD8 167 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 OR5M8Q8NGP6 311 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 OR1S2Q8NGQ3 325 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 LIPHQ8WWY8 451 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 ABHD6Q9BV23 337 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 POTEKPQ9BYX7 375 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 OR11A1Q9GZK7 315 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 CST11Q9H112 138 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 GMEB2Q9UKD1 530 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 TNFSF18Q9UNG2 199 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 PRUNE2Q8WUY3 3088 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 RP1P56715 2156 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 RNF222A6NCQ9 220 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 UBBP0CG47 229 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 UBCP0CG48 685 aaKnown RBP12.61□□□□□ -0.39
USH1C-201ENST00000005226 CNR1P21554 472 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 RPS27AP62979 156 aaKnown RBP12.61□□□□□ -0.39
USH1C-201ENST00000005226 UBA52P62987 128 aaKnown RBP12.61□□□□□ -0.39
USH1C-201ENST00000005226 PPP1R1AQ13522 171 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 PDSS1Q5T2R2 415 aa12.61□□□□□ -0.39
USH1C-201ENST00000005226 C11orf87Q6NUJ2 197 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms