RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 TCTN2Q96GX1 697 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 FCRL1Q96LA6 429 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 TMEM56Q96MV1 263 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 CLCC1Q96S66 551 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 PRDM12Q9H4Q4 367 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 SLC6A13Q9NSD5 602 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 DHDHQ9UQ10 334 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 ZFYVE9O95405 1425 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 CARMIL2Q6F5E8 1435 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 MYMKA6NI61 221 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 MMP11P24347 488 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 ZFAND6Q6FIF0 208 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 UBA3Q8TBC4 463 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 BLNKQ8WV28 456 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 TAAR6Q96RI8 345 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 TKTL2Q9H0I9 626 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 B3GALT5Q9Y2C3 310 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 HSPE1-MOB4S4R3N1 261 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 ZNF521Q96K83 1311 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 CC2D2AQ9P2K1 1620 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 LRRC30A6NM36 301 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 XKRYO14609 159 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 MRASO14807 208 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 RS1O15537 224 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 MSCO60682 206 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 MT-ND4LP03901 98 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 OR56A5P0C7T3 313 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 GZMHP20718 246 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 ST3GAL3Q11203 375 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 SEMA3BQ13214 749 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 ZNF773Q6PK81 442 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 NANOGP1Q8N7R0 232 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 TSSK2Q96PF2 358 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 TPSD1Q9BZJ3 242 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 CMAHPQ9Y471 501 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 ABCA12Q86UK0 2595 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 TMEM89A2RUT3 159 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 PDXKO00764 312 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 ACP2P11117 423 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 ZNF84P51523 738 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 HCCSP53701 268 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 PTP4A2Q12974 167 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 PARP15Q460N3 678 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 Q6ZTK2 550 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 TMEM135Q86UB9 458 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 SGK494Q96LW2 274 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 RBP7Q96R05 134 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 ABHD6Q9BV23 337 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 USF3Q68DE3 2245 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 HRKO00198 91 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 CX3CR1P49238 355 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 HINT1P49773 126 aaPredicted RBP3.26□□□□□ -1.89
SCN1A-221ENST00000641996 TGFBR3Q03167 851 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 NPY5RQ15761 445 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 BSXQ3C1V8 233 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 DCAF10Q5QP82 559 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 TNFAIP8L2Q6P589 184 aaPredicted RBP3.26□□□□□ -1.89
SCN1A-221ENST00000641996 DHRS4L2Q6PKH6 230 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 ZNF788Q6ZQV5 615 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 NRARPQ7Z6K4 114 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 TMPRSS11BQ86T26 416 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 FGFRL1Q8N441 504 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 MS4A15Q8N5U1 240 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 WDR31Q8NA23 367 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 DCAF4Q8WV16 495 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 MRAP2Q96G30 205 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 MFSD1Q9H3U5 465 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 ZDHHC3Q9NYG2 299 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 TLN2Q9Y4G6 2542 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 GXYLT2A0PJZ3 443 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 OR6C6A6NF89 314 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 GAGE10A6NGK3 116 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 FGF19O95750 216 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 CA1P00915 261 aaPredicted RBP3.26□□□□□ -1.89
SCN1A-221ENST00000641996 CCKARP32238 428 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 SSR2P43308 183 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 HMGN3Q15651 99 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 VWA2Q5GFL6 755 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 KHSRPQ92945 711 aaKnown RBP eCLIP3.26□□□□□ -1.892e-6■■■□□ 17.2
SCN1A-221ENST00000641996 FAM210BQ96KR6 192 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 UHRF2Q96PU4 802 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 DPAGT1Q9H3H5 408 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 RLIMQ9NVW2 624 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 NDRG4Q9ULP0 352 aaKnown RBP3.26□□□□□ -1.89
SCN1A-221ENST00000641996 PKD1L2Q7Z442 2459 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 KCNE1BA0A087WTH5 132 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 PIRO00625 290 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 FCMRO60667 390 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 PEX11BO96011 259 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 NGFRP08138 427 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 FAUP35544 74 aaKnown RBP3.26□□□□□ -1.89
SCN1A-221ENST00000641996 TDGF1P3P51864 188 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 RPL7AP62424 266 aaKnown RBP3.26□□□□□ -1.89
SCN1A-221ENST00000641996 FAM98CQ17RN3 349 aaKnown RBP3.26□□□□□ -1.89
SCN1A-221ENST00000641996 C9orf135Q5VTT2 229 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 SLC27A1Q6PCB7 646 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 CD163Q86VB7 1156 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 FAM213BQ8TBF2 198 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 TFB1MQ8WVM0 346 aaKnown RBP3.26□□□□□ -1.89
SCN1A-221ENST00000641996 FAM46AQ96IP4 442 aaKnown RBP3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms