RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 WNT5BQ9H1J7 359 aa13.71□□□□□ -0.21
CLN3-246ENST00000636228 DCAF16Q9NXF7 216 aa13.71□□□□□ -0.21
CLN3-246ENST00000636228 EIF3KQ9UBQ5 218 aaKnown RBP13.71□□□□□ -0.21
CLN3-246ENST00000636228 ISPDA4D126 451 aa13.7□□□□□ -0.22
CLN3-246ENST00000636228 CENPBD1B2RD01 187 aa13.7□□□□□ -0.22
CLN3-246ENST00000636228 NGFP01138 241 aa13.7□□□□□ -0.22
CLN3-246ENST00000636228 TSPAN19P0C672 248 aa13.7□□□□□ -0.22
CLN3-246ENST00000636228 LAP3P28838 519 aa13.7□□□□□ -0.22
CLN3-246ENST00000636228 GDI2P50395 445 aaKnown RBP13.7□□□□□ -0.22
CLN3-246ENST00000636228 SCGB2A2Q13296 93 aa13.7□□□□□ -0.22
CLN3-246ENST00000636228 CYLC2Q14093 348 aaPredicted RBP13.7□□□□□ -0.22
CLN3-246ENST00000636228 MMEL1Q495T6 779 aa13.7□□□□□ -0.22
CLN3-246ENST00000636228 DCAF12L2Q5VW00 463 aa13.7□□□□□ -0.22
CLN3-246ENST00000636228 SLC25A47Q6Q0C1 308 aa13.7□□□□□ -0.22
CLN3-246ENST00000636228 RFPL4BQ6ZWI9 263 aa13.7□□□□□ -0.22
CLN3-246ENST00000636228 C1QL2Q7Z5L3 287 aa13.7□□□□□ -0.22
CLN3-246ENST00000636228 MICU2Q8IYU8 434 aa13.7□□□□□ -0.22
CLN3-246ENST00000636228 C3orf56Q8N813 242 aa13.7□□□□□ -0.22
CLN3-246ENST00000636228 ABHD4Q8TB40 342 aa13.7□□□□□ -0.22
CLN3-246ENST00000636228 KLF14Q8TD94 323 aaPredicted RBP13.7□□□□□ -0.22
CLN3-246ENST00000636228 FAM216AQ8WUB2 273 aa13.7□□□□□ -0.22
CLN3-246ENST00000636228 GEMIN6Q8WXD5 167 aaKnown RBP13.7□□□□□ -0.22
CLN3-246ENST00000636228 LRRC58Q96CX6 371 aa13.7□□□□□ -0.22
CLN3-246ENST00000636228 ELMOD3Q96FG2 381 aa13.7□□□□□ -0.22
CLN3-246ENST00000636228 TIMD4Q96H15 378 aa13.7□□□□□ -0.22
CLN3-246ENST00000636228 GAL3ST1Q99999 423 aa13.7□□□□□ -0.22
CLN3-246ENST00000636228 ECSITQ9BQ95 431 aa13.7□□□□□ -0.22
CLN3-246ENST00000636228 TXNIPQ9H3M7 391 aa13.7□□□□□ -0.22
CLN3-246ENST00000636228 MSL2Q9HCI7 577 aa13.7□□□□□ -0.22
CLN3-246ENST00000636228 UBAP1Q9NZ09 502 aa13.7□□□□□ -0.22
CLN3-246ENST00000636228 BAG5Q9UL15 447 aa13.7□□□□□ -0.22
CLN3-246ENST00000636228 MED31Q9Y3C7 131 aa13.7□□□□□ -0.22
CLN3-246ENST00000636228 TMEM89A2RUT3 159 aa13.69□□□□□ -0.22
CLN3-246ENST00000636228 TRIM77I1YAP6 450 aa13.69□□□□□ -0.22
CLN3-246ENST00000636228 FXYD1O00168 92 aa13.69□□□□□ -0.22
CLN3-246ENST00000636228 EDF1O60869 148 aaKnown RBP13.69□□□□□ -0.22
CLN3-246ENST00000636228 UBOX5O94941 541 aa13.69□□□□□ -0.22
CLN3-246ENST00000636228 SCG5P05408 212 aa13.69□□□□□ -0.22
CLN3-246ENST00000636228 YAP1P46937 504 aaKnown RBP13.69□□□□□ -0.22
CLN3-246ENST00000636228 ALG10Q5BKT4 473 aa13.69□□□□□ -0.22
CLN3-246ENST00000636228 FAM27BQ5VT28 67 aa13.69□□□□□ -0.22
CLN3-246ENST00000636228 ZNF774Q6NX45 483 aa13.69□□□□□ -0.22
CLN3-246ENST00000636228 USP43Q70EL4 1123 aa13.69□□□□□ -0.22
CLN3-246ENST00000636228 HDDC2Q7Z4H3 204 aa13.69□□□□□ -0.22
CLN3-246ENST00000636228 C10orf82Q8WW14 230 aa13.69□□□□□ -0.22
CLN3-246ENST00000636228 LIPHQ8WWY8 451 aa13.69□□□□□ -0.22
CLN3-246ENST00000636228 STON2Q8WXE9 905 aa13.69□□□□□ -0.22
CLN3-246ENST00000636228 TPD52L3Q96J77 140 aa13.69□□□□□ -0.22
CLN3-246ENST00000636228 ZNF583Q96ND8 569 aa13.69□□□□□ -0.22
CLN3-246ENST00000636228 OR2H1Q9GZK4 316 aa13.69□□□□□ -0.22
CLN3-246ENST00000636228 C7orf69Q9H7B7 122 aa13.69□□□□□ -0.22
CLN3-246ENST00000636228 ESM1Q9NQ30 184 aa13.69□□□□□ -0.22
CLN3-246ENST00000636228 RHCGQ9UBD6 479 aa13.69□□□□□ -0.22
CLN3-246ENST00000636228 OPN4Q9UHM6 478 aa13.69□□□□□ -0.22
CLN3-246ENST00000636228 TENM1Q9UKZ4 2725 aa13.69□□□□□ -0.22
CLN3-246ENST00000636228 A0A1W2PPL8 197 aa13.68□□□□□ -0.22
CLN3-246ENST00000636228 PLSCR5A0PG75 271 aa13.68□□□□□ -0.22
CLN3-246ENST00000636228 SPRY1O43609 319 aaPredicted RBP13.68□□□□□ -0.22
CLN3-246ENST00000636228 IFI30P13284 250 aa13.68□□□□□ -0.22
CLN3-246ENST00000636228 EGR1P18146 543 aa13.68□□□□□ -0.22
CLN3-246ENST00000636228 ZFP36P26651 326 aaKnown RBP13.68□□□□□ -0.22
CLN3-246ENST00000636228 COMPP49747 757 aaPredicted RBP13.68□□□□□ -0.22
CLN3-246ENST00000636228 ARFIP2P53365 341 aa13.68□□□□□ -0.22
CLN3-246ENST00000636228 CTXN1P60606 82 aa13.68□□□□□ -0.22
CLN3-246ENST00000636228 PPP1CBP62140 327 aa13.68□□□□□ -0.22
CLN3-246ENST00000636228 LRRC23Q53EV4 343 aaPredicted RBP13.68□□□□□ -0.22
CLN3-246ENST00000636228 CYBRD1Q53TN4 286 aa13.68□□□□□ -0.22
CLN3-246ENST00000636228 FAM209AQ5JX71 171 aa13.68□□□□□ -0.22
CLN3-246ENST00000636228 MBNL2Q5VZF2 373 aaKnown RBP13.68□□□□□ -0.22
CLN3-246ENST00000636228 OR51A7Q8NH64 312 aa13.68□□□□□ -0.22
CLN3-246ENST00000636228 RBP7Q96R05 134 aa13.68□□□□□ -0.22
CLN3-246ENST00000636228 DCLRE1CQ96SD1 692 aaKnown RBP13.68□□□□□ -0.22
CLN3-246ENST00000636228 TMEM120AQ9BXJ8 343 aa13.68□□□□□ -0.22
CLN3-246ENST00000636228 SMURF2Q9HAU4 748 aa13.68□□□□□ -0.22
CLN3-246ENST00000636228 TRAV27A0A087WT01 109 aa13.67□□□□□ -0.22
CLN3-246ENST00000636228 H7C1C5 153 aa13.67□□□□□ -0.22
CLN3-246ENST00000636228 MRASO14807 208 aa13.67□□□□□ -0.22
CLN3-246ENST00000636228 IGF2P01344 180 aa13.67□□□□□ -0.22
CLN3-246ENST00000636228 VIMP08670 466 aaKnown RBP13.67□□□□□ -0.22
CLN3-246ENST00000636228 SBK2P0C263 348 aa13.67□□□□□ -0.22
CLN3-246ENST00000636228 H2AFXP16104 143 aaPredicted RBP13.67□□□□□ -0.22
CLN3-246ENST00000636228 RPL27P61353 136 aaKnown RBP13.67□□□□□ -0.22
CLN3-246ENST00000636228 LCN6P62502 163 aa13.67□□□□□ -0.22
CLN3-246ENST00000636228 BPIFB2Q8N4F0 458 aa13.67□□□□□ -0.22
CLN3-246ENST00000636228 ZDHHC22Q8N966 263 aa13.67□□□□□ -0.22
CLN3-246ENST00000636228 LRRC75AQ8NAA5 344 aa13.67□□□□□ -0.22
CLN3-246ENST00000636228 OR8J3Q8NGG0 315 aa13.67□□□□□ -0.22
CLN3-246ENST00000636228 NANPQ8TBE9 248 aa13.67□□□□□ -0.22
CLN3-246ENST00000636228 BPIFA2Q96DR5 249 aa13.67□□□□□ -0.22
CLN3-246ENST00000636228 C4orf45Q96LM5 186 aa13.67□□□□□ -0.22
CLN3-246ENST00000636228 SH3GL1Q99961 368 aa13.67□□□□□ -0.22
CLN3-246ENST00000636228 RBM4Q9BWF3 364 aaKnown RBP13.67□□□□□ -0.22
CLN3-246ENST00000636228 SUCNR1Q9BXA5 334 aa13.67□□□□□ -0.22
CLN3-246ENST00000636228 POLR2J2Q9GZM3 115 aaKnown RBP13.67□□□□□ -0.22
CLN3-246ENST00000636228 EGLN1Q9GZT9 426 aa13.67□□□□□ -0.22
CLN3-246ENST00000636228 POLR2J3Q9H1A7 115 aaKnown RBP13.67□□□□□ -0.22
CLN3-246ENST00000636228 POFUT1Q9H488 388 aa13.67□□□□□ -0.22
CLN3-246ENST00000636228 GMPR2Q9P2T1 348 aaKnown RBP13.67□□□□□ -0.22
CLN3-246ENST00000636228 STX18Q9P2W9 335 aaKnown RBP13.67□□□□□ -0.22
CLN3-246ENST00000636228 KLHL21Q9UJP4 597 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms