RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 IRF8Q02556 426 aa9.3□□□□□ -0.92
VPS39-214ENST00000614932 TCEA2Q15560 299 aa9.3□□□□□ -0.92
VPS39-214ENST00000614932 MOGAT2Q3SYC2 334 aa9.3□□□□□ -0.92
VPS39-214ENST00000614932 ENPP7Q6UWV6 458 aa9.3□□□□□ -0.92
VPS39-214ENST00000614932 WDR88Q6ZMY6 472 aa9.3□□□□□ -0.92
VPS39-214ENST00000614932 SSX7Q7RTT5 188 aa9.3□□□□□ -0.92
VPS39-214ENST00000614932 C7orf61Q8IZ16 206 aa9.3□□□□□ -0.92
VPS39-214ENST00000614932 ZNF671Q8TAW3 534 aa9.3□□□□□ -0.92
VPS39-214ENST00000614932 ALKBH3Q96Q83 286 aaPredicted RBP9.3□□□□□ -0.92
VPS39-214ENST00000614932 SLC25A31Q9H0C2 315 aa9.3□□□□□ -0.92
VPS39-214ENST00000614932 OR2AG1Q9H205 316 aa9.3□□□□□ -0.92
VPS39-214ENST00000614932 DNAJC4Q9NNZ3 241 aa9.3□□□□□ -0.92
VPS39-214ENST00000614932 WIF1Q9Y5W5 379 aa9.3□□□□□ -0.92
VPS39-214ENST00000614932 SIRT4Q9Y6E7 314 aaPredicted RBP9.3□□□□□ -0.92
VPS39-214ENST00000614932 V9GYS6 101 aa9.3□□□□□ -0.92
VPS39-214ENST00000614932 TRANK1O15050 2925 aa9.3□□□□□ -0.92
VPS39-214ENST00000614932 SCN8AQ9UQD0 1980 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 DENND4CQ5VZ89 1909 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 LINC01553A4QN01 128 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 TMEM235A6NFC5 223 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 ZNF705GA8MUZ8 300 aaPredicted RBP9.29□□□□□ -0.92
VPS39-214ENST00000614932 FFAR1O14842 300 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 ELAVL4P26378 380 aaKnown RBP9.29□□□□□ -0.92
VPS39-214ENST00000614932 WNT5AP41221 380 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 PFN3P60673 137 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 RAP1BP61224 184 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 HERPUD1Q15011 391 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 RPE65Q16518 533 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 ZDHHC20Q5W0Z9 365 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 ZNF529Q6P280 563 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 GLB1L2Q8IW92 636 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 FAM185AQ8N0U4 392 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 STEAP2Q8NFT2 490 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 EDAQ92838 391 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 SLC12A9Q9BXP2 914 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 IGFLR1Q9H665 355 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 IL21RQ9HBE5 538 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 POT1Q9NUX5 634 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 SUSD2Q9UGT4 822 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 FBXW2Q9UKT8 454 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 PLAGL1Q9UM63 463 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 K7EP13 123 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 SMPD2O60906 423 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 SLC16A8O95907 504 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 ADH5P11766 374 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 CDK5Q00535 292 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 SCARB2Q14108 478 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 RAB35Q15286 201 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 IER5LQ5T953 404 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 OR2T2Q6IF00 324 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 TNFAIP8L2Q6P589 184 aaPredicted RBP9.29□□□□□ -0.92
VPS39-214ENST00000614932 VN1R2Q8NFZ6 395 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 OR5M8Q8NGP6 311 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 TNFRSF14Q92956 283 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 TAAR8Q969N4 342 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 TMEM159Q96B96 161 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 ZNF514Q96K75 400 aaPredicted RBP9.29□□□□□ -0.92
VPS39-214ENST00000614932 SERINC1Q9NRX5 453 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 SEMA5BQ9P283 1151 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 ZNF346Q9UL40 294 aaKnown RBP9.29□□□□□ -0.92
VPS39-214ENST00000614932 ADAM18Q9Y3Q7 739 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 SLCO1B1Q9Y6L6 691 aa9.29□□□□□ -0.92
VPS39-214ENST00000614932 AGPAT2O15120 278 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 XRCC3O43542 346 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 OR1F1O43749 312 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 ETHE1O95571 254 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 IGHA1P01876 353 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 CA3P07451 260 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 COX7A2P14406 83 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 AFF3P51826 1226 aaKnown RBP9.28□□□□□ -0.92
VPS39-214ENST00000614932 RPS23P62266 143 aaKnown RBP9.28□□□□□ -0.92
VPS39-214ENST00000614932 LRRC56Q8IYG6 542 aaPredicted RBP9.28□□□□□ -0.92
VPS39-214ENST00000614932 FRMD1Q8N878 549 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 OR9A4Q8NGU2 314 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 NFKBIDQ8NI38 313 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 LGALS14Q8TCE9 139 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 ARSGQ96EG1 525 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 WFIKKN1Q96NZ8 548 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 FAAP24Q9BTP7 215 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 APMAPQ9HDC9 416 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 GPR52Q9Y2T5 361 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 LTBP2Q14767 1821 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 MYO10Q9HD67 2058 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 IGLV3-16A0A075B6K0 115 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 A0A0G2JN53 185 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 A0A1B0GTI1 187 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 C1orf226A1L170 272 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 CBY3A6NI87 242 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 DCTN6O00399 190 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 DFFBO76075 338 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 PPBPP02775 128 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 CD1CP29017 333 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 LIM2P55344 173 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 FZD5Q13467 585 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 CBFBQ13951 182 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 FRG2Q64ET8 278 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 MRM1Q6IN84 353 aaKnown RBP9.28□□□□□ -0.92
VPS39-214ENST00000614932 PXKQ7Z7A4 578 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 TMPRSS11BQ86T26 416 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 ZNF619Q8N2I2 560 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms