RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 EPHA4P54764 986 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 HTRA4P83105 476 aaPredicted RBP11.43□□□□□ -0.58
LIG1-221ENST00000613670 PSG6Q00889 435 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 PAPD4Q6PIY7 484 aaKnown RBP11.43□□□□□ -0.58
LIG1-221ENST00000613670 DNM1P34Q6PK57 102 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 DGAT2L6Q6ZPD8 337 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 LPAR4Q99677 370 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 TCRBV21S2A2A0A5A6 115 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 KCNAB3O43448 404 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 STK17BO94768 372 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 AMY2BP19961 511 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 PGCP20142 388 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 NSDHLQ15738 373 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 ALG11Q2TAA5 492 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 PDSS1Q5T2R2 415 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 OR52W1Q6IF63 320 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 SLC29A4Q7RTT9 530 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 LRRTM1Q86UE6 522 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 C7orf61Q8IZ16 206 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 CLRN3Q8NCR9 226 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 NUDT22Q9BRQ3 303 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 CYP8B1Q9UNU6 501 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 UTS2O95399 124 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 RORAP35398 523 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 ZNF616Q08AN1 781 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 RIPPLY1Q0D2K3 151 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 PLA2G7Q13093 441 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 ZNF273Q14593 569 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 C2orf68Q2NKX9 166 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 NHLRC3Q5JS37 347 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 KRBOX4Q5JUW0 171 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 EIF5AL1Q6IS14 154 aaKnown RBP11.43□□□□□ -0.58
LIG1-221ENST00000613670 OR5M9Q8NGP3 310 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 ATOH1Q92858 354 aaPredicted RBP11.43□□□□□ -0.58
LIG1-221ENST00000613670 FGGYQ96C11 551 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 CMBLQ96DG6 245 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 ZNF578Q96N58 590 aaPredicted RBP11.43□□□□□ -0.58
LIG1-221ENST00000613670 MENTQ9BUN1 341 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 PARP12Q9H0J9 701 aaKnown RBP11.43□□□□□ -0.58
LIG1-221ENST00000613670 POLE3Q9NRF9 147 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 DTX4Q9Y2E6 619 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 OR5K3A6NET4 321 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 CBR1P16152 277 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 MGMTP16455 207 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 ZP2Q05996 745 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 TOMM20Q15388 145 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 NKAPLQ5M9Q1 402 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 OR6N1Q8NGY5 312 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 LMX1AQ8TE12 382 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 SFXN1Q9H9B4 322 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 COA3Q9Y2R0 106 aaPredicted RBP11.42□□□□□ -0.58
LIG1-221ENST00000613670 RFPL4AA6NLU0 287 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 RFPL4AL1F8VTS6 287 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 GPR31O00270 319 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 DCTN6O00399 190 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 ARPC3O15145 178 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 ZNF658BQ4V348 819 aaPredicted RBP11.42□□□□□ -0.58
LIG1-221ENST00000613670 FAM219AQ8IW50 185 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 BAHD1Q8TBE0 780 aaPredicted RBP11.42□□□□□ -0.58
LIG1-221ENST00000613670 NT5CQ8TCD5 201 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 CD300LFQ8TDQ1 290 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 FGF11Q92914 225 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 ZNF707Q96C28 371 aaPredicted RBP11.42□□□□□ -0.58
LIG1-221ENST00000613670 MAP3K3Q99759 626 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 OR11A1Q9GZK7 315 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 RHPN2P1A8MT19 583 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 ATG12O94817 140 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 THEGLP0DJG4 465 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 SLC2A1P11166 492 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 CTRB1P17538 263 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 ACAA2P42765 397 aaKnown RBP11.42□□□□□ -0.58
LIG1-221ENST00000613670 ATP1B3P54709 279 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 EMP2P54851 167 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 PMPCAQ10713 525 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 DHRS2Q13268 280 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 ACKR1Q16570 336 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 SLC22A6Q4U2R8 563 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 CTRB2Q6GPI1 263 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 RGS7BPQ6MZT1 257 aaPredicted RBP11.42□□□□□ -0.58
LIG1-221ENST00000613670 MDGA2Q7Z553 956 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 STK35Q8TDR2 534 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 MARVELD3Q96A59 401 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 ADAT1Q9BUB4 502 aaKnown RBP11.42□□□□□ -0.58
LIG1-221ENST00000613670 SLC25A32Q9H2D1 315 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 PCDHB10Q9UN67 800 aa11.42□□□□□ -0.58
LIG1-221ENST00000613670 FAM74A7A6NL05 159 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 ERCC1P07992 297 aaPredicted RBP11.41□□□□□ -0.58
LIG1-221ENST00000613670 GAAP10253 952 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 ADRA2CP18825 462 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 NME2P22392 152 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 NPY4RP50391 375 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 RBM39Q14498 530 aaKnown RBP11.41□□□□□ -0.58
LIG1-221ENST00000613670 MEF2DQ14814 521 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 FAM74A3Q4VXF1 159 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 FCRL6Q6DN72 434 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 ANKRD16Q6P6B7 361 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 OR2W3Q7Z3T1 314 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 GALNT16Q8N428 558 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 OR5D18Q8NGL1 313 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 TCEAL2Q9H3H9 227 aaPredicted RBP11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms