RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	SYNGR4	O95473	234 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	HTR1A	P08908	422 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	ATP6V1B1	P15313	513 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	ZNF43	P17038	809 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	SPI1	P17947	270 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	SLC2A5	P22732	501 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	LOX	P28300	417 aa	Predicted RBP	11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	PCSK6	P29122	969 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	PYCR1	P32322	319 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	SLC16A1	P53985	500 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	CLDN17	P56750	224 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	RPS7	P62081	194 aa	Known RBP	11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	SLC35A2	P78381	396 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	SLC17A1	Q14916	467 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	PON3	Q15166	354 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	GUSBP1	Q15486	140 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	TMEM154	Q6P9G4	183 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	B3GLCT	Q6Y288	498 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	MEPCE	Q7L2J0	689 aa	Known RBP	11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	SHF	Q7M4L6	423 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	ADCK1	Q86TW2	530 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	PRIMA1	Q86XR5	153 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	ZNF610	Q8N9Z0	462 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	TSPAN14	Q8NG11	270 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	OR51L1	Q8NGJ5	315 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	ABHD3	Q8WU67	409 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	ZNRF4	Q8WWF5	429 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	RNFT2	Q96EX2	444 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	ZC3HAV1L	Q96H79	300 aa	Known RBP	11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	ZNF385A	Q96PM9	386 aa	Known RBP	11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	HS3ST6	Q96QI5	342 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	COPS4	Q9BT78	406 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	NMNAT2	Q9BZQ4	307 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	SYT4	Q9H2B2	425 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	RERGL	Q9H628	205 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	FKBP14	Q9NWM8	211 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	ASB6	Q9NWX5	421 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	H2AFY2	Q9P0M6	372 aa	Predicted RBP	11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	PSORS1C1	Q9UIG5	152 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	RPL36	Q9Y3U8	105 aa	Known RBP	11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	FREM1	Q5H8C1	2179 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	LOC102725191	A0A1B0GVB3	256 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	SLC22A23	A1A5C7	686 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	PRSS37	A4D1T9	235 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	SLC35F4	A4IF30	521 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	TRIM64B	A6NI03	449 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012		A6NIZ1	184 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	ZNF716	A6NP11	495 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	DCTN6	O00399	190 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	CYTIP	O60759	359 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	MT-ND2	P03891	347 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	ADRA2A	P08913	450 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	PPP3CB	P16298	524 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	GSTT1	P30711	240 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	HTR1F	P30939	366 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	SLC15A1	P46059	708 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	PTH2R	P49190	550 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	SLC25A1	P53007	311 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	RAP1B	P61224	184 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	RAP1A	P62834	184 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	CSNK2B	P67870	215 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	MVK	Q03426	396 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	FMOD	Q06828	376 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	CAMK2D	Q13557	499 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	BEX5	Q5H9J7	111 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	CARD17	Q5XLA6	110 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	FAM205BP	Q63HN1	556 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	GTF2IRD2B	Q6EKJ0	949 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	ZNF773	Q6PK81	442 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	CREB3L2	Q70SY1	520 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	FAM214B	Q7L5A3	538 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	GTF2IRD2	Q86UP8	949 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	SYT14	Q8NB59	555 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	NOXO1	Q8NFA2	376 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	RNF128	Q8TEB7	428 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	KISS1R	Q969F8	398 aa	Predicted RBP	11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	RFK	Q969G6	155 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	ZNF775	Q96BV0	537 aa	Predicted RBP	11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	LGALS12	Q96DT0	336 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	KCNK17	Q96T54	332 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	MRPS26	Q9BYN8	205 aa	Known RBP	11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	PRRG4	Q9BZD6	226 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	CCDC90B	Q9GZT6	254 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	DUSP21	Q9H596	190 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	SRA1	Q9HD15	236 aa	Known RBP	11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	PAQR5	Q9NXK6	330 aa	Predicted RBP	11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	VSX1	Q9NZR4	365 aa	Predicted RBP	11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	MCTS1	Q9ULC4	181 aa	Known RBP	11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	AKAP8L	Q9ULX6	646 aa	Known RBP eCLIP	11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	EMC9	Q9Y3B6	208 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012	PRR14L	Q5THK1	2151 aa		11.14	□□□□□ -0.63
UPF1-208	ENST00000600012		A0A087WXM4	84 aa		11.13	□□□□□ -0.63
UPF1-208	ENST00000600012	EFCAB10	A6NFE3	127 aa		11.13	□□□□□ -0.63
UPF1-208	ENST00000600012	SNTN	A6NMZ2	147 aa		11.13	□□□□□ -0.63
UPF1-208	ENST00000600012	ZNF726	A6NNF4	738 aa		11.13	□□□□□ -0.63
UPF1-208	ENST00000600012	RGS10	O43665	173 aa		11.13	□□□□□ -0.63
UPF1-208	ENST00000600012	TMCC2	O75069	709 aa		11.13	□□□□□ -0.63
UPF1-208	ENST00000600012	AQP8	O94778	261 aa		11.13	□□□□□ -0.63
UPF1-208	ENST00000600012	CDK1	P06493	297 aa		11.13	□□□□□ -0.63
UPF1-208	ENST00000600012	MRPL3	P09001	348 aa	Known RBP	11.13	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms