RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 SIGLEC11Q96RL6 698 aa8.49□□□□□ -1.05
TRIM28-210ENST00000597618 RMND5AQ9H871 391 aa8.49□□□□□ -1.05
TRIM28-210ENST00000597618 MEAF6Q9HAF1 191 aa8.49□□□□□ -1.05
TRIM28-210ENST00000597618 MSL2Q9HCI7 577 aa8.49□□□□□ -1.05
TRIM28-210ENST00000597618 CCNB1IP1Q9NPC3 277 aa8.49□□□□□ -1.05
TRIM28-210ENST00000597618 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.49□□□□□ -1.05
TRIM28-210ENST00000597618 KLHL21Q9UJP4 597 aa8.49□□□□□ -1.05
TRIM28-210ENST00000597618 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.49□□□□□ -1.05
TRIM28-210ENST00000597618 TENM3Q9P273 2699 aa8.48□□□□□ -1.05
TRIM28-210ENST00000597618 C5orf63A6NC05 138 aa8.48□□□□□ -1.05
TRIM28-210ENST00000597618 ICMTO60725 284 aa8.48□□□□□ -1.05
TRIM28-210ENST00000597618 MELTFP08582 738 aa8.48□□□□□ -1.05
TRIM28-210ENST00000597618 WNT2P09544 360 aa8.48□□□□□ -1.05
TRIM28-210ENST00000597618 NUDT7P0C024 238 aa8.48□□□□□ -1.05
TRIM28-210ENST00000597618 RPS2P15880 293 aaKnown RBP8.48□□□□□ -1.05
TRIM28-210ENST00000597618 ARHGDIAP52565 204 aa8.48□□□□□ -1.05
TRIM28-210ENST00000597618 RGS8P57771 180 aaPredicted RBP8.48□□□□□ -1.05
TRIM28-210ENST00000597618 PROK1P58294 105 aa8.48□□□□□ -1.05
TRIM28-210ENST00000597618 GNB2P62879 340 aa8.48□□□□□ -1.05
TRIM28-210ENST00000597618 FADDQ13158 208 aa8.48□□□□□ -1.05
TRIM28-210ENST00000597618 OR1Q1Q15612 314 aa8.48□□□□□ -1.05
TRIM28-210ENST00000597618 HIST3H3Q16695 136 aa8.48□□□□□ -1.05
TRIM28-210ENST00000597618 BEAN1Q3B7T3 259 aa8.48□□□□□ -1.05
TRIM28-210ENST00000597618 KPRPQ5T749 579 aaPredicted RBP8.48□□□□□ -1.05
TRIM28-210ENST00000597618 ZNF774Q6NX45 483 aa8.48□□□□□ -1.05
TRIM28-210ENST00000597618 MSANTD1Q6ZTZ1 278 aa8.48□□□□□ -1.05
TRIM28-210ENST00000597618 COMTD1Q86VU5 262 aa8.48□□□□□ -1.05
TRIM28-210ENST00000597618 RANBP3LQ86VV4 465 aaPredicted RBP8.48□□□□□ -1.05
TRIM28-210ENST00000597618 KRT73Q86Y46 540 aa8.48□□□□□ -1.05
TRIM28-210ENST00000597618 NOXO1Q8NFA2 376 aa8.48□□□□□ -1.05
TRIM28-210ENST00000597618 LINC01006Q8NI28 216 aa8.48□□□□□ -1.05
TRIM28-210ENST00000597618 VANGL1Q8TAA9 524 aaPredicted RBP8.48□□□□□ -1.05
TRIM28-210ENST00000597618 SSMEM1Q8WWF3 244 aa8.48□□□□□ -1.05
TRIM28-210ENST00000597618 DYRK2Q92630 601 aa8.48□□□□□ -1.05
TRIM28-210ENST00000597618 MCHR2Q969V1 340 aa8.48□□□□□ -1.05
TRIM28-210ENST00000597618 VPS33AQ96AX1 596 aa8.48□□□□□ -1.05
TRIM28-210ENST00000597618 DACT3Q96B18 629 aaPredicted RBP8.48□□□□□ -1.05
TRIM28-210ENST00000597618 ITCHQ96J02 903 aa8.48□□□□□ -1.05
TRIM28-210ENST00000597618 PLEKHA8Q96JA3 519 aa8.48□□□□□ -1.05
TRIM28-210ENST00000597618 SPATA5L1Q9BVQ7 753 aa8.48□□□□□ -1.05
TRIM28-210ENST00000597618 RAD21L1Q9H4I0 556 aa8.48□□□□□ -1.05
TRIM28-210ENST00000597618 SIAEQ9HAT2 523 aa8.48□□□□□ -1.05
TRIM28-210ENST00000597618 PPP1R3CQ9UQK1 317 aa8.48□□□□□ -1.05
TRIM28-210ENST00000597618 LOC100509620A0A075B734 347 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 KIR2DS1A0A191URI9 304 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 CENPBD1B2RD01 187 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 TMEM178BH3BS89 294 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 IFNL4K9M1U5 179 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 SURF4O15260 269 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 BMP2P12643 396 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 GSTM3P21266 225 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 ETV4P43268 484 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 CDH12P55289 794 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 MRPS34P82930 218 aaKnown RBP8.47□□□□□ -1.05
TRIM28-210ENST00000597618 RGNQ15493 299 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 ZNF74Q16587 644 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 GTDC1Q4AE62 458 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 TTMPQ5BVD1 217 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 C6orf10Q5SRN2 563 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 NLRC3Q7RTR2 1065 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 HDDC2Q7Z4H3 204 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 KLBQ86Z14 1044 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 EIF1ADQ8N9N8 165 aaKnown RBP8.47□□□□□ -1.05
TRIM28-210ENST00000597618 OR2Z1Q8NG97 314 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 PKNOX2Q96KN3 472 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 ZNF347Q96SE7 839 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 SORT1Q99523 831 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 SEPHS2Q99611 448 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 ELOVL3Q9HB03 270 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 SLCO1B3Q9NPD5 702 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 NANSQ9NR45 359 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 MAN2C1Q9NTJ4 1040 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 TAS2R5Q9NYW4 299 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 KIF17Q9P2E2 1029 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 MIOXQ9UGB7 285 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 IL19Q9UHD0 177 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 LGALS13Q9UHV8 139 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 HAO1Q9UJM8 370 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 SLC13A4Q9UKG4 626 aa8.47□□□□□ -1.05
TRIM28-210ENST00000597618 PRORSD1PA6NEY8 169 aa8.46□□□□□ -1.06
TRIM28-210ENST00000597618 MCIDASD6RGH6 385 aa8.46□□□□□ -1.06
TRIM28-210ENST00000597618 G3V4G9 280 aa8.46□□□□□ -1.06
TRIM28-210ENST00000597618 TYROBPO43914 113 aa8.46□□□□□ -1.06
TRIM28-210ENST00000597618 GPR137BO60478 399 aa8.46□□□□□ -1.06
TRIM28-210ENST00000597618 SLC22A3O75751 556 aa8.46□□□□□ -1.06
TRIM28-210ENST00000597618 CSF1P09603 554 aa8.46□□□□□ -1.06
TRIM28-210ENST00000597618 IDO1P14902 403 aa8.46□□□□□ -1.06
TRIM28-210ENST00000597618 ZNF32P17041 273 aa8.46□□□□□ -1.06
TRIM28-210ENST00000597618 SLC1A6P48664 564 aa8.46□□□□□ -1.06
TRIM28-210ENST00000597618 MMP16P51512 607 aa8.46□□□□□ -1.06
TRIM28-210ENST00000597618 ZNF133P52736 654 aaPredicted RBP8.46□□□□□ -1.06
TRIM28-210ENST00000597618 FGF12P61328 243 aa8.46□□□□□ -1.06
TRIM28-210ENST00000597618 PSG4Q00888 419 aa8.46□□□□□ -1.06
TRIM28-210ENST00000597618 PSG7Q13046 419 aa8.46□□□□□ -1.06
TRIM28-210ENST00000597618 TAF11Q15544 211 aa8.46□□□□□ -1.06
TRIM28-210ENST00000597618 C10orf128Q5T292 105 aa8.46□□□□□ -1.06
TRIM28-210ENST00000597618 HHATQ5VTY9 493 aa8.46□□□□□ -1.06
TRIM28-210ENST00000597618 ZNF613Q6PF04 617 aa8.46□□□□□ -1.06
TRIM28-210ENST00000597618 ARL9Q6T311 187 aa8.46□□□□□ -1.06
TRIM28-210ENST00000597618 ALDH16A1Q8IZ83 802 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms